Choosing dyes for cw-STED nanoscopy using self-assembled nanorulers

Phys Chem Chem Phys. 2014 Apr 21;16(15):6990-6. doi: 10.1039/c4cp00127c. Epub 2014 Mar 6.

Abstract

Superresolution microscopy is currently revolutionizing optical imaging. A key factor for getting images of highest quality is - besides a well-performing imaging system - the labeling of the sample. We compared the fluorescent dyes Abberior Star 488, Alexa 488, Chromeo 488 and Oregon Green 488 for use in continuous wave (cw-)STED microscopy in aqueous buffer and in a durable polymer matrix. To optimize comparability, we designed DNA origami standards labeled with the fluorescent dyes including a bead-like DNA origami with dyes focused on one spot and a DNA origami with two marks at a designed distance of ∼100 nm. Our data show that all dyes are well suited for cw-STED microscopy but that the optimal dye depends on the embedding medium. The precise comparison enabled by DNA origami nanorulers indicates that these structures have matured from the proof-of-concept to easily applicable tools in fluorescence microscopy.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • DNA / chemistry*
  • Fluorescent Dyes / chemistry*
  • Microscopy, Atomic Force
  • Microscopy, Fluorescence
  • Nanostructures / chemistry*
  • Surface Properties

Substances

  • Fluorescent Dyes
  • DNA