T-immunogenic peptides are constituted of rare sequence patterns. Use in the identification of T epitopes in the human immunodeficiency virus gag protein

Eur J Immunol. 1988 Oct;18(10):1547-53. doi: 10.1002/eji.1830181012.

Abstract

The sequences of a set of 63 peptides of demonstrated T immunogenicity have been analyzed and compared with two different randomly generated sets of sequences. This study indicates a statistically significant tendency of T immunogenic peptides to be constituted of clusters of rare tetrapeptides, as evaluated from the available sequence data banks. This result has been used to locate potential T epitopes in the human immunodeficiency virus (HIV) gag protein. Four peptides corresponding to the best candidate T epitopes (chosen in regions of conserved sequence among different virus isolates) have been synthesized and found to be recognized by a HIV-1-specific, HLA-A2-restricted human cytotoxic T cell line.

MeSH terms

  • Amino Acid Sequence
  • Epitopes
  • Gene Products, gag
  • HIV / immunology*
  • HIV Antigens / genetics*
  • HIV Antigens / immunology
  • Humans
  • Information Systems
  • Molecular Sequence Data
  • Peptides / immunology
  • Retroviridae Proteins / genetics
  • Retroviridae Proteins / immunology*
  • Statistics as Topic
  • Structure-Activity Relationship
  • T-Lymphocytes / immunology*

Substances

  • Epitopes
  • Gene Products, gag
  • HIV Antigens
  • Peptides
  • Retroviridae Proteins