Structural and functional similarity of amphibian constitutive androstane receptor with mammalian pregnane X receptor

PLoS One. 2014 May 5;9(5):e96263. doi: 10.1371/journal.pone.0096263. eCollection 2014.

Abstract

The nuclear receptors and xenosensors constitutive androstane receptor (CAR, NR1I3) and pregnane X receptor (PXR, NR1I2) induce the expression of xenobiotic metabolizing enzymes and transporters, which also affects various endobiotics. While human and mouse CAR feature a high basal activity and low induction upon ligand exposure, we recently identified two constitutive androstane receptors in Xenopus laevis (xlCARá and â) that possess PXR-like characteristics such as low basal activity and activation in response to structurally diverse compounds. Using a set of complementary computational and biochemical approaches we provide evidence for xlCARá being the structural and functional counterpart of mammalian PXR. A three-dimensional model of the xlCARá ligand-binding domain (LBD) reveals a human PXR-like L-shaped ligand binding pocket with a larger volume than the binding pockets in human and murine CAR. The shape and amino acid composition of the ligand-binding pocket of xlCAR suggests PXR-like binding of chemically diverse ligands which was confirmed by biochemical methods. Similarly to PXR, xlCARá possesses a flexible helix 11'. Modest increase in the recruitment of coactivator PGC-1á may contribute to the enhanced basal activity of three gain-of-function xlCARá mutants humanizing key LBD amino acid residues. xlCARá and PXR appear to constitute an example of convergent evolution.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amphibian Proteins / chemistry*
  • Amphibian Proteins / physiology
  • Animals
  • Binding Sites
  • COS Cells
  • Cell Line
  • Chlorocebus aethiops
  • Constitutive Androstane Receptor
  • Crystallography, X-Ray
  • Humans
  • Models, Molecular
  • Molecular Dynamics Simulation
  • Pregnane X Receptor
  • Receptors, Cytoplasmic and Nuclear / chemistry*
  • Receptors, Cytoplasmic and Nuclear / physiology
  • Receptors, Steroid / chemistry*
  • Receptors, Steroid / physiology
  • Xenopus laevis

Substances

  • Amphibian Proteins
  • Constitutive Androstane Receptor
  • NR1I2 protein, human
  • NR1I3 protein, human
  • Nr1i2 protein, mouse
  • Nr1i3 protein, mouse
  • Pregnane X Receptor
  • Receptors, Cytoplasmic and Nuclear
  • Receptors, Steroid

Grants and funding

The work was supported by the institutions employing the authors: University Medical Center, Mainz; Institute of Clinical Pharmacology, Stuttgart; Institute of Anthropology, Johannes Gutenberg—University Mainz; European ScreeningPort GmbH, Hamburg. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.