Wrapping/unwrapping transition of double-stranded DNA in DNA-nanosphere complexes induced by multivalent anions

Soft Matter. 2014 Jul 21;10(27):4875-84. doi: 10.1039/c4sm00652f. Epub 2014 May 27.

Abstract

Wrapping and unwrapping behaviors of double-stranded DNA around a positively charged nanosphere in solution are studied by using the coarse-grained molecular dynamics (CGMD) simulation method. When monovalent, divalent and trivalent anions are added to the DNA-nanosphere complex solution, double-stranded DNA binds with a nanosphere owing to strong electrostatic attraction. However, when tetravalent anions are added to the DNA-nanosphere complex solution, local charge inversion is observed for a high anion concentration of tetravalent anions and the double-stranded DNA can be unwrapped from the nanosphere because of the local charge inversion near the nanosphere. Moreover, the helical structure of DNA is damaged when double-stranded DNA wraps around the nanosphere and the helical structure can be rebuilt when the double-stranded DNA unwraps from the nanosphere. This study can help us understand how to control the release of DNA in DNA-nanosphere complexes.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Anions / chemistry
  • DNA / chemistry*
  • Molecular Dynamics Simulation
  • Nanospheres / chemistry*

Substances

  • Anions
  • DNA