Directed arginine deiminase evolution for efficient inhibition of arginine-auxotrophic melanomas

Appl Microbiol Biotechnol. 2015 Feb;99(3):1237-47. doi: 10.1007/s00253-014-5985-z. Epub 2014 Aug 9.

Abstract

Arginine deiminase (ADI) is a therapeutic protein for cancer therapy of arginine-auxotrophic tumors. However, ADI's application as anticancer drug is hampered by its low activity for arginine under physiological conditions mainly due to its high "K M" (S₀.₅) values which are often 1 magnitude higher than the arginine concentration in blood (0.10-0.12 mM arginine in human plasma). Previous evolution campaigns were directed by us with the aim of boosting activity of PpADI (ADI from Pseudomonas plecoglossicida, k cat = 0.18 s(-1); S₀.₅ = 1.30 mM), and yielded variant M6 with slightly reduced S₀.₅ values and enhanced k cat (S₀.₅ = 0.81 mM; k cat = 11.64 s(-1)). In order to further reduce the S₀.₅ value and to increase the activity of PpADI at physiological arginine concentration, a more sensitive screening system based on ammonia detection in 96-well microtiter plate to reliably detect ≥0.005 mM ammonia was developed. After screening ~5,500 clones with the ammonia detection system (ADS) in two rounds of random mutagenesis and site-directed mutagenesis, variant M19 with increased k cat value (21.1 s(-1); 105.5-fold higher compared to WT) and reduced S₀.₅ value (0.35 mM compared to 0.81 mM (M6) and 1.30 mM (WT)) was identified. Improved performance of M19 was validated by determining IC₅₀ values for two melanoma cell lines. The IC₅₀ value for SK-MEL-28 dropped from 8.67 (WT) to 0.10 (M6) to 0.04 μg/mL (M19); the IC₅₀ values for G361 dropped from 4.85 (WT) to 0.12 (M6) to 0.05 μg/mL (M19).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Ammonia / analysis
  • Antineoplastic Agents / metabolism*
  • Arginine / metabolism*
  • Cell Line, Tumor
  • Directed Molecular Evolution / methods*
  • Drug Evaluation, Preclinical
  • High-Throughput Screening Assays
  • Humans
  • Hydrolases / genetics*
  • Hydrolases / metabolism*
  • Inhibitory Concentration 50
  • Kinetics
  • Melanoma / drug therapy
  • Mutagenesis
  • Pseudomonas / enzymology*

Substances

  • Antineoplastic Agents
  • Ammonia
  • Arginine
  • Hydrolases
  • arginine deiminase