Atomically detailed lipid bilayer models for the interpretation of small angle neutron and X-ray scattering data

Biochim Biophys Acta. 2015 Feb;1848(2):662-72. doi: 10.1016/j.bbamem.2014.10.041. Epub 2014 Nov 25.

Abstract

We present a new atom density profile (ADP) model and a statistical approach for extracting structural characteristics of lipid bilayers from X-ray and neutron scattering data. Models for five lipids with varying head and tail chemical composition in the fluid phase, 1,2-dioleoyl-sn-glycero-3-phosphatidylcholine (DOPC), 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphatidylcholine (POPC), 1,2-dipalmitoyl-sn-glycero-3-phosphatidylcholine (DPPC), 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphatidylserine (POPS), and 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphatidylglycerol (POPG), are optimized using a simplex based method to simultaneously reproduce both neutron and X-ray scattering data. Structural properties are determined using statistical analysis of multiple optimal model structures. The method and models presented make minimal assumptions regarding the atomic configuration, while taking into account the underlying physical properties of the system. The more general model and statistical approach yield data with well defined uncertainties, indicating the precision in determining density profiles, atomic locations, and bilayer structural characteristics. Resulting bilayer structures include regions exhibiting large conformational variation. Due to the increased detail in the model, the results demonstrate the possibility of a distinct hydration layer within the interfacial (backbone) region.

Keywords: Model membrane; SANS; SAXS; Simplex based optimization.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Lipid Bilayers / chemistry*
  • Models, Chemical*
  • Neutron Diffraction
  • Phosphatidylcholines / chemistry
  • Phosphatidylglycerols / chemistry
  • Phosphatidylserines / chemistry
  • Quantum Theory
  • Scattering, Radiation
  • X-Ray Diffraction

Substances

  • Lipid Bilayers
  • Phosphatidylcholines
  • Phosphatidylglycerols
  • Phosphatidylserines
  • 1,2-diphytanoylphosphatidylcholine
  • 1-palmitoyl-2-oleoylglycero-3-phosphoserine
  • 1-palmitoyl-2-oleoylglycero-3-phosphoglycerol
  • 1,2-oleoylphosphatidylcholine
  • 1-palmitoyl-2-oleoylphosphatidylcholine