Perdeuteration: improved visualization of solvent structure in neutron macromolecular crystallography

Acta Crystallogr D Biol Crystallogr. 2014 Dec 1;70(Pt 12):3266-72. doi: 10.1107/S1399004714021610. Epub 2014 Nov 28.

Abstract

The 1.8 Å resolution neutron structure of deuterated type III antifreeze protein in which the methyl groups of leucine and valine residues are selectively protonated is presented. Comparison between this and the 1.85 Å resolution neutron structure of perdeuterated type III antifreeze protein indicates that perdeuteration improves the visibility of solvent molecules located in close vicinity to hydrophobic residues, as cancellation effects between H atoms of the methyl groups and nearby heavy-water molecules (D2O) are avoided.

Keywords: neutron macromolecular crystallography; perdeuteration; solvent visibility.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Antifreeze Proteins, Type III / chemistry*
  • Deuterium / chemistry
  • Fish Proteins / chemistry*
  • Models, Molecular
  • Neutron Diffraction / methods*
  • Perciformes* / metabolism
  • Protons
  • Solvents / chemistry
  • Water / chemistry

Substances

  • Antifreeze Proteins, Type III
  • Fish Proteins
  • Protons
  • Solvents
  • Water
  • Deuterium