Structural insight into mechanisms for dynamic regulation of PKM2

Protein Cell. 2015 Apr;6(4):275-287. doi: 10.1007/s13238-015-0132-x. Epub 2015 Feb 4.

Abstract

Pyruvate kinase isoform M2 (PKM2) converts phosphoenolpyruvate (PEP) to pyruvate and plays an important role in cancer metabolism. Here, we show that post-translational modifications and a patient-derived mutation regulate pyruvate kinase activity of PKM2 through modulating the conformation of the PKM2 tetramer. We determined crystal structures of human PKM2 mutants and proposed a "seesaw" model to illustrate conformational changes between an inactive T-state and an active R-state tetramers of PKM2. Biochemical and structural analyses demonstrate that PKM2(Y105E) (phosphorylation mimic of Y105) decreases pyruvate kinase activity by inhibiting FBP (fructose 1,6-bisphosphate)-induced R-state formation, and PKM2(K305Q) (acetylation mimic of K305) abolishes the activity by hindering tetramer formation. K422R, a patient-derived mutation of PKM2, favors a stable, inactive T-state tetramer because of strong intermolecular interactions. Our study reveals the mechanism for dynamic regulation of PKM2 by post-translational modifications and a patient-derived mutation and provides a structural basis for further investigation of other modifications and mutations of PKM2 yet to be discovered.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acetylation
  • Allosteric Regulation
  • Carrier Proteins / chemistry*
  • Carrier Proteins / genetics
  • Carrier Proteins / metabolism
  • Crystallography, X-Ray
  • Fructosediphosphates / chemistry
  • Fructosediphosphates / metabolism
  • Gene Expression
  • Humans
  • Kinetics
  • Membrane Proteins / chemistry*
  • Membrane Proteins / genetics
  • Membrane Proteins / metabolism
  • Models, Molecular
  • Mutation
  • Neoplasms / enzymology*
  • Neoplasms / genetics
  • Neoplasms / pathology
  • Phosphorylation
  • Protein Conformation
  • Protein Multimerization
  • Protein Processing, Post-Translational*
  • Protein Subunits / chemistry*
  • Protein Subunits / genetics
  • Protein Subunits / metabolism
  • Thyroid Hormone-Binding Proteins
  • Thyroid Hormones / chemistry*
  • Thyroid Hormones / genetics
  • Thyroid Hormones / metabolism
  • Tumor Cells, Cultured

Substances

  • Carrier Proteins
  • Fructosediphosphates
  • Membrane Proteins
  • Protein Subunits
  • Thyroid Hormones
  • fructose-1,6-diphosphate

Associated data

  • PDB/4QG6
  • PDB/4QG8
  • PDB/4QG9
  • PDB/4QGC
  • PDB/4RPP