Integrative network analysis reveals molecular mechanisms of blood pressure regulation

Mol Syst Biol. 2015 Apr 16;11(1):799. doi: 10.15252/msb.20145399.

Abstract

Genome-wide association studies (GWAS) have identified numerous loci associated with blood pressure (BP). The molecular mechanisms underlying BP regulation, however, remain unclear. We investigated BP-associated molecular mechanisms by integrating BP GWAS with whole blood mRNA expression profiles in 3,679 individuals, using network approaches. BP transcriptomic signatures at the single-gene and the coexpression network module levels were identified. Four coexpression modules were identified as potentially causal based on genetic inference because expression-related SNPs for their corresponding genes demonstrated enrichment for BP GWAS signals. Genes from the four modules were further projected onto predefined molecular interaction networks, revealing key drivers. Gene subnetworks entailing molecular interactions between key drivers and BP-related genes were uncovered. As proof-of-concept, we validated SH2B3, one of the top key drivers, using Sh2b3(-/-) mice. We found that a significant number of genes predicted to be regulated by SH2B3 in gene networks are perturbed in Sh2b3(-/-) mice, which demonstrate an exaggerated pressor response to angiotensin II infusion. Our findings may help to identify novel targets for the prevention or treatment of hypertension.

Keywords: blood pressure; coexpression network; gene expression; hypertension; systems biology.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, N.I.H., Intramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adaptor Proteins, Signal Transducing
  • Adult
  • Aged
  • Angiotensin II / metabolism
  • Animals
  • Blood Pressure / genetics*
  • Body Mass Index
  • Cohort Studies
  • Disease Models, Animal
  • Female
  • Gene Regulatory Networks
  • Genetic Loci
  • Genome-Wide Association Study
  • Humans
  • Hypertension / genetics*
  • Intracellular Signaling Peptides and Proteins / genetics
  • Intracellular Signaling Peptides and Proteins / metabolism
  • Linear Models
  • Male
  • Membrane Proteins
  • Mice
  • Mice, Knockout
  • Middle Aged
  • Polymorphism, Single Nucleotide
  • Protein Interaction Domains and Motifs
  • RNA, Messenger / genetics
  • RNA, Messenger / metabolism
  • Sequence Analysis, RNA
  • Systems Biology
  • Transcriptome
  • Young Adult

Substances

  • Adaptor Proteins, Signal Transducing
  • Intracellular Signaling Peptides and Proteins
  • Lnk protein, mouse
  • Membrane Proteins
  • RNA, Messenger
  • Angiotensin II

Associated data

  • GEO/GSE65348