A small molecule--DNA binding landscape

Biopolymers. 2015 Sep;103(9):473-9. doi: 10.1002/bip.22660.

Abstract

This brief account traces the development of a "competition dialysis" method used to characterize the structural and sequence selectivity of DNA binding compounds. The method was inspired by a simple "differential dialysis" method pioneered by Don Crothers to explore base-selective intercalator binding. Results from compiled competition dialysis studies provide a small-molecule DNA binding landscape that shows a rich diversity of interactions and molecular recognition.

Keywords: DNA binding; Donald Crothers; dialysis; molecular recognition.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Binding Sites
  • DNA / chemistry*
  • Nucleic Acid Conformation

Substances

  • DNA