The biological function of an insect antifreeze protein simulated by molecular dynamics

Elife. 2015 May 7:4:e05142. doi: 10.7554/eLife.05142.

Abstract

Antifreeze proteins (AFPs) protect certain cold-adapted organisms from freezing to death by selectively adsorbing to internal ice crystals and inhibiting ice propagation. The molecular details of AFP adsorption-inhibition is uncertain but is proposed to involve the Gibbs-Thomson effect. Here we show by using unbiased molecular dynamics simulations a protein structure-function mechanism for the spruce budworm Choristoneura fumiferana AFP, including stereo-specific binding and consequential melting and freezing inhibition. The protein binds indirectly to the prism ice face through a linear array of ordered water molecules that are structurally distinct from the ice. Mutation of the ice binding surface disrupts water-ordering and abolishes activity. The adsorption is virtually irreversible, and we confirm the ice growth inhibition is consistent with the Gibbs-Thomson law.

Keywords: antifreeze proteins; biophysics; computational biology; crystallization inhibition; ice-binding; molecular dynamics; none; structural biology; systems biology; thermal hysteresis.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adaptation, Physiological
  • Animals
  • Antifreeze Proteins / chemistry*
  • Antifreeze Proteins / genetics
  • Binding Sites
  • Cold Temperature
  • Crystallization
  • Freezing
  • Hydrogen Bonding
  • Ice / analysis*
  • Insect Proteins / chemistry*
  • Insect Proteins / genetics
  • Kinetics
  • Lepidoptera / chemistry*
  • Lepidoptera / physiology
  • Molecular Dynamics Simulation*
  • Mutation
  • Protein Binding
  • Structure-Activity Relationship
  • Thermodynamics
  • Threonine / chemistry*

Substances

  • Antifreeze Proteins
  • Ice
  • Insect Proteins
  • Threonine

Grants and funding

The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.