Cymbidium chlorotic mosaic virus, a new sobemovirus isolated from a spring orchid (Cymbidium goeringii) in Japan

Arch Virol. 2015 Aug;160(8):2099-104. doi: 10.1007/s00705-015-2460-9. Epub 2015 May 31.

Abstract

Cymbidium chlorotic mosaic virus (CyCMV), isolated from a spring orchid (Cymbidium goeringii), was characterized molecularly. CyCMV isometric virions comprise a single, positive-strand RNA genome of 4,083 nucleotides and 30-kDa coat protein. The virus genome contains five overlapping open reading frames with a genomic organization similar to that of sobemoviruses. BLAST searches and phylogenetic analysis revealed that CyCMV is most closely related to papaya lethal yellowing virus, a proposed dicot-infecting sobemovirus (58.8 % nucleotide sequence identity), but has a relatively distant relationship to monocot-infecting sobemoviruses, with only modest sequence identities. This suggests that CyCMV is a new monocot-infecting member of the floating genus Sobemovirus.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Genome, Viral
  • Japan
  • Molecular Sequence Data
  • Open Reading Frames
  • Orchidaceae / virology*
  • Phylogeny
  • Plant Diseases / virology*
  • Plant Leaves / virology
  • RNA Viruses / classification
  • RNA Viruses / genetics
  • RNA Viruses / isolation & purification*
  • Viral Proteins / genetics

Substances

  • Viral Proteins