Double-headed nucleotides introducing thymine nucleobases in the major groove of nucleic acid duplexes

Org Biomol Chem. 2015 Jul 7;13(25):7040-9. doi: 10.1039/c5ob00872g. Epub 2015 Jun 5.

Abstract

Four different double-headed nucleosides each combining two thymine nucleobases with different linkers were synthesised. The 5-position of 2'-deoxyuridine was connected to the N1-position of a thymine through either m- or p-disubstituted phenyl or phenylacetylene linkers by the use of Suzuki or Sonogashira couplings. When introduced into oligonucleotides, the thermal stability of dsDNA and DNA : RNA duplexes were determined and structural information was obtained from CD- and fluorescence spectroscopy. Also the recognition of abasic sites was studied. In general, the more stable duplexes were obtained with m- rather than p-substitution and with phenylacetylene rather than phenyl linkers.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acetylene / analogs & derivatives
  • Base Sequence
  • Deoxyuridine / chemical synthesis
  • Deoxyuridine / chemistry*
  • Models, Molecular
  • Nucleic Acid Conformation
  • Nucleic Acids / chemical synthesis
  • Nucleic Acids / chemistry*
  • Nucleotides / chemical synthesis
  • Nucleotides / chemistry*
  • Thymine / chemical synthesis
  • Thymine / chemistry*

Substances

  • Nucleic Acids
  • Nucleotides
  • Acetylene
  • Thymine
  • Deoxyuridine