Genomewide Histone H3 Lysine 9 Acetylation Profiling in CD4+ T Cells Revealed Endoplasmic Reticulum Stress Deficiency in Patients with Acute-on-chronic Liver Failure

Scand J Immunol. 2015 Nov;82(5):452-9. doi: 10.1111/sji.12341.

Abstract

Acute-on-chronic liver failure (ACLF) displayed 'sepsis-like' immune paralysis. Little is known about the role of CD4+ T lymphocytes, the primary regulator of innate and adopted immune system, played in ACLF. Acetylation of histone H3 lysine 9 (H3K9ac), a key epigenetic modification, tightly controls gene transcription. Whether and how does H3K9ac modification regulate CD4+ T cells in ACLF remains unclear. PBMCs were isolated from patients with ACLF, immune tolerance of chronic hepatitis B (CHB-T) and immune active of chronic hepatitis B (CHB-A). Then, CD4+ T lymphocytes were purified by magnetic microbeads, and the purity was confirmed by flow cytometry. H3K9ac variations were analysed in CD4+ T cells using chromatin immunoprecipitation microarray and then confirmed by quantitative PCR. Whole-genome H3K9 acetylation analyses were conducted by bioinformatics. A total of 70 genes were differently modified in H3K9ac between CHB-A and ACLF groups, while 44 genes were differently modified in H3K9ac between CHB-T and ACLF groups. Clustering algorithm analysis showed patients with ACLF displayed 'sepsis-like' immune paralysis. Functional analysis showed endoplasmic reticulum (ER) stress, or downstream pathway-related genes, such as BIP, ATF4, PER1, CSNK1D, IRF3, BNIP1, AKT1 and UBC, were differentially modified in ACLF. We profiled H3K9 acetyl modification in CD4+ T lymphocytes from HBV-infected patients with three different immune states, that is ACLF, immune tolerance and immune active phases. ACLF displayed 'sepsis-like' immune paralysis. ER stress in CD4+ T lymphocytes attributed to ACLF. This study provides some useful clues for revealing the mechanisms underlying ACLF.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acetylation
  • Acute-On-Chronic Liver Failure / genetics
  • Acute-On-Chronic Liver Failure / immunology*
  • Adult
  • CD4-Positive T-Lymphocytes / physiology*
  • Chromatin Immunoprecipitation
  • DNA Fingerprinting
  • Endoplasmic Reticulum Stress* / genetics
  • Endoplasmic Reticulum Stress* / immunology
  • Female
  • Genome
  • Hepacivirus / immunology*
  • Hepatitis C, Chronic / genetics
  • Hepatitis C, Chronic / immunology*
  • Histones / genetics
  • Histones / metabolism*
  • Humans
  • Immune Tolerance / genetics
  • Immune Tolerance / immunology
  • Immunologic Deficiency Syndromes / genetics
  • Immunologic Deficiency Syndromes / immunology*
  • Lysine / metabolism
  • Male
  • Microarray Analysis
  • Middle Aged
  • Multigene Family / genetics
  • Phosphotransferases / genetics
  • Sepsis / genetics
  • Sepsis / immunology*
  • Signal Transduction / genetics
  • Signal Transduction / immunology
  • Transcription Factors / genetics
  • Young Adult

Substances

  • Histones
  • Transcription Factors
  • Phosphotransferases
  • Lysine