Directed evolution of the tryptophan synthase β-subunit for stand-alone function recapitulates allosteric activation

Proc Natl Acad Sci U S A. 2015 Nov 24;112(47):14599-604. doi: 10.1073/pnas.1516401112. Epub 2015 Nov 9.

Abstract

Enzymes in heteromeric, allosterically regulated complexes catalyze a rich array of chemical reactions. Separating the subunits of such complexes, however, often severely attenuates their catalytic activities, because they can no longer be activated by their protein partners. We used directed evolution to explore allosteric regulation as a source of latent catalytic potential using the β-subunit of tryptophan synthase from Pyrococcus furiosus (PfTrpB). As part of its native αββα complex, TrpB efficiently produces tryptophan and tryptophan analogs; activity drops considerably when it is used as a stand-alone catalyst without the α-subunit. Kinetic, spectroscopic, and X-ray crystallographic data show that this lost activity can be recovered by mutations that reproduce the effects of complexation with the α-subunit. The engineered PfTrpB is a powerful platform for production of Trp analogs and for further directed evolution to expand substrate and reaction scope.

Keywords: PLP; allostery; noncanonical amino acid; protein engineering.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Allosteric Regulation
  • Amino Acids / metabolism
  • Biocatalysis
  • Crystallography, X-Ray
  • Directed Molecular Evolution*
  • Genetic Engineering
  • Ligands
  • Models, Molecular
  • Mutagenesis, Site-Directed
  • Mutation / genetics
  • Protein Subunits / chemistry
  • Protein Subunits / metabolism*
  • Pyrococcus furiosus / enzymology*
  • Salmonella typhimurium / enzymology
  • Spectrophotometry, Ultraviolet
  • Substrate Specificity
  • Tryptophan Synthase / chemistry
  • Tryptophan Synthase / metabolism*

Substances

  • Amino Acids
  • Ligands
  • Protein Subunits
  • Tryptophan Synthase

Associated data

  • PDB/5DVZ
  • PDB/5DW0
  • PDB/5DW3
  • PDB/5E0K