Epoxomicin and Eponemycin Biosynthesis Involves gem-Dimethylation and an Acyl-CoA Dehydrogenase-Like Enzyme

Chembiochem. 2016 May 3;17(9):792-8. doi: 10.1002/cbic.201500567. Epub 2016 Feb 25.

Abstract

The α',β'-epoxyketone moiety of proteasome inhibitors confers high binding specificity to the N-terminal threonine in catalytic proteasome β-subunits. We recently identified the epoxomicin and eponemycin biosynthetic gene clusters and have now conducted isotope-enriched precursor feeding studies and comprehensive gene deletion experiments to shed further light on their biosynthetic pathways. Leucine and two methyl groups from S-adenosylmethionine were readily incorporated into the epoxyketone warhead, suggesting decarboxylation of the thioester intermediate. Formation of the α',β'-epoxyketone is likely mediated by conserved acyl-CoA dehydrogenase-like enzymes, as indicated by complete loss of epoxomicin and eponemycin production in the respective knockout mutants. Our results clarify crucial questions in the formation of epoxyketone compounds and lay the foundation for in vitro biochemical studies on the biosynthesis of this pharmaceutically important class of proteasome inhibitors.

Keywords: acyl-CoA dehydrogenase; biosynthesis; epoxomicin; epoxyketone warhead; proteasome inhibitor.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acyl-CoA Dehydrogenase / genetics
  • Acyl-CoA Dehydrogenase / metabolism*
  • Amides / chemistry
  • Chromatography, High Pressure Liquid
  • Isotope Labeling
  • Magnetic Resonance Spectroscopy
  • Methionine / metabolism
  • Multigene Family
  • Oligopeptides / biosynthesis
  • Oligopeptides / chemistry
  • Proteasome Inhibitors / chemistry
  • Proteasome Inhibitors / metabolism
  • Serine / analogs & derivatives*
  • Serine / biosynthesis
  • Serine / chemistry
  • Streptomyces / genetics
  • Streptomyces / metabolism
  • Tandem Mass Spectrometry

Substances

  • Amides
  • Oligopeptides
  • Proteasome Inhibitors
  • eponemycin
  • Serine
  • Methionine
  • Acyl-CoA Dehydrogenase
  • epoxomicin