Formation of M-Like Intermediates in Proteorhodopsin in Alkali Solutions (pH ≥ ∼8.5) Where the Proton Release Occurs First in Contrast to the Sequence at Lower pH

Biochemistry. 2016 Feb 23;55(7):1036-48. doi: 10.1021/acs.biochem.5b01196. Epub 2016 Feb 8.

Abstract

Proteorhodopsin (PR) is an outward light-driven proton pump observed in marine eubacteria. Despite many structural and functional similarities to bacteriorhodopsin (BR) in archaea, which also acts as an outward proton pump, the mechanism of the photoinduced proton release and uptake is different between two H(+)-pumps. In this study, we investigated the pH dependence of the photocycle and proton transfer in PR reconstituted with the phospholipid membrane under alkaline conditions. Under these conditions, as the medium pH increased, a blue-shifted photoproduct (defined as Ma), which is different from M, with a pKa of ca. 9.2 was produced. The sequence of the photoinduced proton uptake and release during the photocycle was inverted with the increase in pH. A pKa value of ca. 9.5 was estimated for this inversion and was in good agreement with the pKa value of the formation of Ma (∼ 9.2). In addition, we measured the photoelectric current generated by PRs attached to a thin polymer film at varying pH. Interestingly, increases in the medium pH evoked bidirectional photocurrents, which may imply a possible reversal of the direction of the proton movement at alkaline pH. On the basis of these findings, a putative photocycle and proton transfer scheme in PR under alkaline pH conditions was proposed.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Algorithms
  • Amino Acid Substitution
  • Aquatic Organisms / metabolism
  • Aquatic Organisms / radiation effects
  • Bacterial Proteins / chemistry
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism*
  • Biocatalysis / radiation effects
  • Biological Transport / radiation effects
  • Eubacterium / metabolism
  • Eubacterium / radiation effects
  • Gammaproteobacteria / metabolism
  • Gammaproteobacteria / radiation effects
  • Halobacterium salinarum / metabolism
  • Halobacterium salinarum / radiation effects
  • Hydrogen-Ion Concentration
  • Immobilized Proteins / chemistry
  • Immobilized Proteins / genetics
  • Immobilized Proteins / metabolism
  • Lipid Bilayers / chemistry
  • Membranes, Artificial
  • Models, Molecular*
  • Mutation
  • Phosphatidylcholines / chemistry
  • Photochemical Processes
  • Proton Pumps / chemistry
  • Proton Pumps / genetics
  • Proton Pumps / metabolism*
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / metabolism
  • Rhodopsins, Microbial / chemistry
  • Rhodopsins, Microbial / genetics
  • Rhodopsins, Microbial / metabolism*

Substances

  • Bacterial Proteins
  • Immobilized Proteins
  • Lipid Bilayers
  • Membranes, Artificial
  • Phosphatidylcholines
  • Proton Pumps
  • Recombinant Proteins
  • Rhodopsins, Microbial
  • proteorhodopsin