Meta-analysis of the differentially expressed microRNA profiles in nasopharyngeal carcinoma

Oncotarget. 2016 Mar 1;7(9):10513-21. doi: 10.18632/oncotarget.7013.

Abstract

MicroRNAs(miRNAs), as non-coding molecules, were proved to be correlated with gene expression in naspharyngeal carcinoma (NPC) development. In this research, a comprehensive meta-analysis of eight independent miRNA expression studies in NPC was preformed by using robust rank aggregation method (RRA), which contained a total of 775 tumor and 227 non-cancerous samples. There were 7 significant dysregulated miRNAs identified including three increased (miR-483-5p, miR-29c-3p and miR-205-5p) and four decreased (miR-29b-3p, let-7d-5p, miR-100- 5p and let-7g-5p) miRNAs. Subsequently, the miRNA target prediction and pathway enrichment analysis were carried out to find out the biological and functional relevant genes involved in the meta-signature miRNA regulation. Finally, several signaling and cancer pathogenesis pathways were suggested to be more frequently associated with the progression of NPC. In this research the meta-signature miRNA identified may be used to develop a series of diagnostic and prognostic biomarkers for NPC that serve specificity for use in clinics.

Keywords: meta-analysis; miRNA; nasopharyngeal carcinoma; profiling; roubust rank aggregation method.

Publication types

  • Meta-Analysis
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Carcinoma
  • Gene Expression Profiling
  • Gene Expression Regulation, Neoplastic / genetics*
  • Gene Regulatory Networks / genetics*
  • Humans
  • MicroRNAs / biosynthesis
  • MicroRNAs / genetics*
  • Nasopharyngeal Carcinoma
  • Nasopharyngeal Neoplasms / genetics*
  • Oligonucleotide Array Sequence Analysis
  • Signal Transduction

Substances

  • MicroRNAs