The Role of a Nonribosomal Peptide Synthetase in l-Lysine Lactamization During Capuramycin Biosynthesis

Chembiochem. 2016 May 3;17(9):804-10. doi: 10.1002/cbic.201500701. Epub 2016 Mar 18.

Abstract

Capuramycins are one of several known classes of natural products that contain an l-Lys-derived l-α-amino-ɛ-caprolactam (l-ACL) unit. The α-amino group of l-ACL in a capuramycin is linked to an unsaturated hexuronic acid component through an amide bond that was previously shown to originate by an ATP-independent enzymatic route. With the aid of a combined in vivo and in vitro approach, a predicted tridomain nonribosomal peptide synthetase CapU is functionally characterized here as the ATP-dependent amide-bond-forming catalyst responsible for the biosynthesis of the remaining amide bond present in l-ACL. The results are consistent with the adenylation domain of CapU as the essential catalytic component for l-Lys activation and thioesterification of the adjacent thiolation domain. However, in contrast to expectations, lactamization does not require any additional domains or proteins and is likely a nonenzymatic event. The results set the stage for examining whether a similar NRPS-mediated mechanism is employed in the biosynthesis of other l-ACL-containing natural products and, just as intriguingly, how spontaneous lactamization is avoided in the numerous NRPS-derived peptides that contain an unmodified l-Lys residue.

Keywords: antibiotics; biosynthesis; natural products; nonribosomal peptides; nucleosides.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aminoglycosides / biosynthesis*
  • Aminoglycosides / chemistry
  • Caprolactam / chemistry
  • Caprolactam / metabolism
  • Chromatography, High Pressure Liquid
  • Lysine / metabolism*
  • Peptide Synthases / genetics
  • Peptide Synthases / metabolism*
  • Streptomyces / enzymology
  • Streptomyces / genetics

Substances

  • Aminoglycosides
  • capuramycin
  • Caprolactam
  • Peptide Synthases
  • non-ribosomal peptide synthase
  • Lysine