Integrated molecular mechanism directing nucleosome reorganization by human FACT

Genes Dev. 2016 Mar 15;30(6):673-86. doi: 10.1101/gad.274183.115. Epub 2016 Mar 10.

Abstract

Facilitates chromatin transcription (FACT) plays essential roles in chromatin remodeling during DNA transcription, replication, and repair. Our structural and biochemical studies of human FACT-histone interactions present precise views of nucleosome reorganization, conducted by the FACT-SPT16 (suppressor of Ty 16) Mid domain and its adjacent acidic AID segment. AID accesses the H2B N-terminal basic region exposed by partial unwrapping of the nucleosomal DNA, thereby triggering the invasion of FACT into the nucleosome. The crystal structure of the Mid domain complexed with an H3-H4 tetramer exhibits two separate contact sites; the Mid domain forms a novel intermolecular β structure with H4. At the other site, the Mid-H2A steric collision on the H2A-docking surface of the H3-H4 tetramer within the nucleosome induces H2A-H2B displacement. This integrated mechanism results in disrupting the H3 αN helix, which is essential for retaining the nucleosomal DNA ends, and hence facilitates DNA stripping from histone.

Keywords: FACT; H2A–H2B displacement; chromatin remodeling; histone chaperone; nucleosome reorganization; transcription.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Crystallization
  • Cytidine Deaminase / metabolism
  • DNA / metabolism
  • DNA-Binding Proteins / chemistry*
  • DNA-Binding Proteins / genetics
  • DNA-Binding Proteins / metabolism*
  • High Mobility Group Proteins / chemistry*
  • High Mobility Group Proteins / genetics
  • High Mobility Group Proteins / metabolism*
  • Histones / chemistry*
  • Histones / metabolism*
  • Humans
  • Models, Molecular*
  • Mutation
  • Nucleosomes / metabolism*
  • Protein Binding
  • Protein Structure, Quaternary
  • Transcriptional Elongation Factors / chemistry*
  • Transcriptional Elongation Factors / genetics
  • Transcriptional Elongation Factors / metabolism*

Substances

  • DNA-Binding Proteins
  • High Mobility Group Proteins
  • Histones
  • Nucleosomes
  • SSRP1 protein, human
  • Transcriptional Elongation Factors
  • DNA
  • AICDA (activation-induced cytidine deaminase)
  • Cytidine Deaminase