Lentibacillus kimchii sp. nov., an extremely halophilic bacterium isolated from kimchi, a Korean fermented vegetable

Antonie Van Leeuwenhoek. 2016 Jun;109(6):869-76. doi: 10.1007/s10482-016-0686-5. Epub 2016 Mar 22.

Abstract

A Gram-positive, aerobic, non-motile and extremely halophilic bacterial strain, designated K9(T), was isolated from kimchi, a Korean fermented food. The strain was observed as endospore-forming rod-shaped cells showing oxidase and catalase activity. It was found to grow at 10.0-30.0 % (w/v) NaCl (optimum, 15.0-20.0 %), pH 7.0-8.0 (optimum, pH 7.5) and 15-40 °C (optimum, 30 °C). The polar lipids of strain K9(T) were identified as phosphatidylglycerol, three unidentified phospholipids and an unidentified glycolipid. The isoprenoid quinone was identified as menaquinone-7. The major cellular fatty acids (>20 % of the total) were found to be anteisio-C15:0 and anteisio-C17:0. The cell wall peptidoglycan composition was determined to contain meso-diaminopimelic acid. The G + C content of genomic DNA was determined to be 48.2 mol %. Phylogenetic analysis based on the 16S rRNA gene sequence revealed that the isolated strain is closely related to Lentibacillus salinarum AHS-1(T) (96.7 % sequence similarity). Based on its phenotypic, chemotaxonomic and phylogenetic data, strain K9(T) is considered to represent a novel species of the genus Lentibacillus, for which the name Lentibacillus kimchii sp. nov., is proposed. The type strain is K9(T) (=KACC 18490(T) = JCM 30234(T)).

Keywords: Extreme halophile; Kimchi; Korean fermented vegetable; Lentibacillus kimchii sp. nov.; Taxonomy.

MeSH terms

  • Bacillaceae / classification*
  • Bacillaceae / genetics
  • Bacillaceae / isolation & purification*
  • Bacillaceae / metabolism
  • Bacterial Typing Techniques
  • Cell Wall / metabolism
  • DNA, Bacterial / genetics
  • DNA, Ribosomal / genetics
  • Diaminopimelic Acid / metabolism
  • Fatty Acids / metabolism
  • Fermentation
  • Food Microbiology
  • Halobacteriales / classification
  • Halobacteriales / genetics
  • Halobacteriales / isolation & purification
  • Halobacteriales / metabolism
  • Peptidoglycan / chemistry
  • Phenotype
  • Phospholipids / metabolism
  • Phylogeny
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Sodium Chloride / metabolism
  • Vegetables / microbiology*
  • Vitamin K 2 / analogs & derivatives
  • Vitamin K 2 / metabolism

Substances

  • DNA, Bacterial
  • DNA, Ribosomal
  • Fatty Acids
  • Peptidoglycan
  • Phospholipids
  • RNA, Ribosomal, 16S
  • Vitamin K 2
  • Sodium Chloride
  • Diaminopimelic Acid
  • menaquinone 7