The dried aerial parts of 12 plants of Cirsium species were extracted with the Soxhlet apparatus using dichloromethane and methanol as solvents. Next, the extracts were separated by TLC methods to obtain the fingerprint chromatograms. The analysis was performed on silica gel or RP-18 layers as stationary phases using the following eluents: ethyl acetate/formic acid/acetic acid/water (12/1.5/1.5/4; v/v) for silica gel, and 5% (v/v) aqueous solution of formic acid/methanol (70/30; v/v) for the first development and the same system in the proportion of 50/50 (v/v) for the second development for RP-18. The double development was applied in the case of RP-18 plates. The analysis was performed for all Cirsium methanolic extracts and five selected standards (naringin, apigenin, rutin, caffeic acid and chlorogenic acid). The results were analyzed using chemometrics. The comparison of individual Cirsium species and the identification of unknown species were performed using the similarity indices (Pearson's correlation coefficient, determination coefficient and congruence coefficient), distance indices (Euclidean distance, Manhattan distance and Chebyshev's distance) and Multi-Scale Structural SIMilarity. Based on chemometric analysis, the first extract of the widely grown species is identified as Cirsium arvense and the second one as Cirsium rivulare.
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