Phenol degradation by Sulfobacillus acidophilus TPY via the meta-pathway

Microbiol Res. 2016 Sep:190:37-45. doi: 10.1016/j.micres.2016.05.005. Epub 2016 May 14.

Abstract

Due to its toxicity and volatility, phenol must be cleared from the environment. Sulfobacillus acidophilus TPY, which was isolated from a hydrothermal vent in the Pacific Ocean as a moderately thermoacidophilic Gram-positive bacterium, was capable of aerobically degrading phenol. This bacterium could tolerate up to 1300mg/L phenol and degrade 100mg/L phenol in 40h completely at 45°C and pH 1.8 with a maximal degradation rate of 2.32mg/L/h at 38h. Genome-wide search revealed that one gene (TPY_3176) and 14 genes clustered together in two regions with locus tags of TPY_0628-0634 and TPY_0640-0646 was proposed to be involved in phenol degradation via the meta-pathway with both the 4-oxalocrotonate branch and the hydrolytic branch. Real-time PCR analysis of S. acidophilus TPY under phenol cultivation condition confirmed the transcription of proposed genes involved in the phenol degradation meta-pathway. Degradation of 3-methylphenol and 2-methylphenol confirmed that the hydrolytic branch was utilised by S. acidophilus TPY. Phylogenetic analysis revealed that S. acidophilus TPY was closely related to sulphate-reducing bacteria and some Gram-positive phenol-degrading bacteria. This was the first report demonstrating the ability of S. acidophilus to degrade phenol and characterising the putative genes involved in phenol metabolism in S. acidophilus TPY.

Keywords: Meta-pathway; Phenol degradation; Sulfobacillus acidophilus.

MeSH terms

  • Aerobiosis
  • Biotransformation
  • Clostridiales / classification
  • Clostridiales / genetics
  • Clostridiales / isolation & purification
  • Clostridiales / metabolism*
  • Cluster Analysis
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / genetics
  • DNA, Ribosomal / chemistry
  • DNA, Ribosomal / genetics
  • Gene Expression Profiling
  • Genes, Bacterial
  • Genetic Loci
  • Hydrogen-Ion Concentration
  • Hydrothermal Vents / microbiology
  • Metabolic Networks and Pathways*
  • Multigene Family
  • Pacific Ocean
  • Phenol / metabolism*
  • Phylogeny
  • RNA, Ribosomal, 16S / genetics
  • Real-Time Polymerase Chain Reaction
  • Sequence Analysis, DNA
  • Temperature
  • Transcription, Genetic

Substances

  • DNA, Bacterial
  • DNA, Ribosomal
  • RNA, Ribosomal, 16S
  • Phenol