An Encapsulation of Gene Signatures for Hepatocellular Carcinoma, MicroRNA-132 Predicted Target Genes and the Corresponding Overlaps

PLoS One. 2016 Jul 28;11(7):e0159498. doi: 10.1371/journal.pone.0159498. eCollection 2016.

Abstract

Objectives: Previous studies have demonstrated that microRNA-132 plays a vital part in and is actively associated with several cancers, with its tumor-suppressive role in hepatocellular carcinoma confirmed. The current study employed multiple bioinformatics techniques to establish gene signatures for hepatocellular carcinoma, microRNA-132 predicted target genes and the corresponding overlaps.

Methods: Various assays were performed to explore the role and cellular functions of miR-132 in HCC and a successive panel of tasks was completed, including NLP analysis, miR-132 target genes prediction, comprehensive analyses (gene ontology analysis, pathway analysis, network analysis and connectivity analysis), and analytical integration. Later, HCC-related and miR-132-related potential targets, pathways, networks and highlighted hub genes were revealed as well as those of the overlapped section.

Results: MiR-132 was effective in both impeding cell growth and boosting apoptosis in HCC cell lines. A total of fifty-nine genes were obtained from the analytical integration, which were considered to be both HCC- and miR-132-related. Moreover, four specific pathways were unveiled in the network analysis of the overlaps, i.e. adherens junction, VEGF signaling pathway, neurotrophin signaling pathway, and MAPK signaling pathway.

Conclusions: The tumor-suppressive role of miR-132 in HCC has been further confirmed by in vitro experiments. Gene signatures in the study identified the potential molecular mechanisms of HCC, miR-132 and their established associations, which might be effective for diagnosis, individualized treatments and prognosis of HCC patients. However, combined detections of miR-132 with other bio-indicators in clinical practice and further in vitro experiments are needed.

MeSH terms

  • Carcinoma, Hepatocellular / genetics*
  • Cell Line, Tumor
  • Humans
  • Liver Neoplasms / genetics*
  • MicroRNAs / genetics*

Substances

  • MIRN132 microRNA, human
  • MicroRNAs

Grants and funding

The study was supported by the funds of Guangxi Natural Science Foundation (2013GXNSFBA019191), Key Laboratory for High-Incidence Tumor Prevention and Treatment by Ministry of Education of China (GKE2015-ZZ04), Research Projects of Department of Health of Guangxi Zhuang Autonomous Region (Z2013424) and Sponsoring Projects of Scientific Research for Universities in Guangxi (LX2014064). The funders had no role in study design, data collection and analysis, preparation of the manuscript or decision to publish.