Improved insights into protein thermal stability: from the molecular to the structurome scale

Philos Trans A Math Phys Eng Sci. 2016 Nov 13;374(2080):20160141. doi: 10.1098/rsta.2016.0141.

Abstract

Despite the intense efforts of the last decades to understand the thermal stability of proteins, the mechanisms responsible for its modulation still remain debated. In this investigation, we tackle this issue by showing how a multiscale perspective can yield new insights. With the help of temperature-dependent statistical potentials, we analysed some amino acid interactions at the molecular level, which are suggested to be relevant for the enhancement of thermal resistance. We then investigated the thermal stability at the protein level by quantifying its modification upon amino acid substitutions. Finally, a large scale analysis of protein stability-at the structurome level-contributed to the clarification of the relation between stability and natural evolution, thereby showing that the mutational profile of proteins differs according to their thermal properties. Some considerations on how the multiscale approach could help in unravelling the protein stability mechanisms are briefly discussed.This article is part of the themed issue 'Multiscale modelling at the physics-chemistry-biology interface'.

Keywords: amino acid interactions; evolutionary pressure; protein mutations; stability prediction; statistical potentials.

MeSH terms

  • Amino Acids / chemistry*
  • Computer Simulation
  • Models, Chemical*
  • Models, Molecular
  • Protein Conformation
  • Protein Denaturation
  • Protein Folding
  • Protein Stability*
  • Proteins / chemistry*
  • Proteins / ultrastructure*
  • Temperature
  • Thermodynamics

Substances

  • Amino Acids
  • Proteins