Divalent Cations Increase DNA Repair Activities of Bacterial (6-4) Photolyases

Photochem Photobiol. 2017 Jan;93(1):323-330. doi: 10.1111/php.12698.

Abstract

The (6-4) photolyases of the FeS-BCP group can be considered as the most ancient type among the large family of cryptochrome and photolyase flavoproteins. In contrast to other photolyases, they contain an Fe-S cluster of unknown function, a DMRL chromophore, an interdomain loop, which could interact with DNA, and a long C-terminal extension. We compared DNA repair and photoreduction of two members of the FeS-BCP family, Agrobacterium fabrum PhrB and Rhodobacter sphaeroides RsCryB, with a eukaryotic (6-4) photolyase from Ostreococcus, OsCPF, and a member of the class III CPD photolyases, PhrA from A. fabrum. We found that the low DNA repair effectivity of FeS-BCP proteins is largely stimulated by Mg2+ and other divalent cations, whereas no effect of divalent cations was observed in OsCPF and PhrA. The (6-4) repair activity in the presence of Mg2+ is comparable with the repair activities of the other two photolyases. The photoreduction, on the other hand, is negatively affected by Mg2+ in PhrB, but stimulated by Mg2+ in PhrA. A clear relationship of Mg2+ dependency on DNA repair with the evolutionary position conflicts with Mg2+ dependency of photoreduction. We discuss the Mg2+ effect in the context of structural data and DNA binding.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Agrobacterium / enzymology*
  • Agrobacterium / genetics
  • Catalytic Domain
  • Cations, Divalent
  • Chlorophyta / enzymology*
  • DNA Repair*
  • DNA, Bacterial / metabolism
  • DNA, Plant / metabolism
  • Deoxyribodipyrimidine Photo-Lyase / chemistry
  • Deoxyribodipyrimidine Photo-Lyase / genetics
  • Deoxyribodipyrimidine Photo-Lyase / metabolism*
  • Iron-Sulfur Proteins / metabolism
  • Light*
  • Magnesium / metabolism*
  • Mutagenesis
  • Oxidation-Reduction
  • Rhodobacter sphaeroides / enzymology*

Substances

  • Cations, Divalent
  • DNA, Bacterial
  • DNA, Plant
  • Iron-Sulfur Proteins
  • pyrimidine(6-4)pyrimidone photolyase
  • Deoxyribodipyrimidine Photo-Lyase
  • Magnesium