A novel, complex RUNX2 gene mutation causes cleidocranial dysplasia

BMC Med Genet. 2017 Feb 7;18(1):13. doi: 10.1186/s12881-017-0375-x.

Abstract

Background: Haploinsufficiency of the runt-related transcription factor 2 (RUNX2) gene is known to cause cleidocranial dysplasia (CCD). Here, we investigated a complex, heterozygous RUNX2 gene mutation in a Chinese family with CCD and the pathogenesis associated with the variations.

Methods: Genomic DNA extracted from peripheral venous blood was taken from the proband, her parents and 3 siblings, and 150 normal controls. Analysis of their respective RUNX2 gene sequences was performed by PCR amplification and Sanger sequencing. Pathogenesis associated with RUNX2 mutations was investigated by performing bioinformatics, real-time PCR, western blot analysis, and subcellular localization studies.

Results: We identified 2 complex heterozygous mutations involving a c.398-399 insACAGCAGCAGCAGCA insertion and a c.411-412 insG frameshift mutation in exon 3 of the RUNX2 gene. The frameshift mutation changed the structure of the RUNX2 protein while did not affect its expression at the mRNA level. Transfection of HEK293T cells with a plasmid expressing the RUNX2 variant decreased the molecular weight of the variant RUNX2 protein, compared with that of the wild-type protein. Subcellular localization assays showed both nuclear and cytoplasmic localization for the mutant protein, while the wild-type protein localized to the nucleus.

Conclusions: Our findings demonstrated that the novel c.398-399insACAGCAGCAGCAGCA mutation occurred alongside the c.411-412insG frameshift mutation, which resulted in RUNX2 truncation. RUNX2 haploinsufficiency was associated with CCD pathogenesis. These results extend the known mutational spectrum of the RUNX2 gene and suggest a functional role of the novel mutation in CCD pathogenesis.

Keywords: Craniofacial anomalies; Haploinsufficiency; Molecular genetics; Oral systemic disease(s); RUNX2; Truncation protein.

Publication types

  • Case Reports

MeSH terms

  • Adolescent
  • Cleidocranial Dysplasia / diagnosis
  • Cleidocranial Dysplasia / genetics*
  • Core Binding Factor Alpha 1 Subunit / genetics*
  • Core Binding Factor Alpha 1 Subunit / metabolism
  • DNA Mutational Analysis
  • Exons
  • Female
  • Frameshift Mutation
  • Genotype
  • HEK293 Cells
  • Heterozygote
  • Humans
  • Molecular Weight
  • Protein Structure, Tertiary
  • RNA / chemistry
  • RNA / isolation & purification
  • RNA / metabolism
  • RNA, Messenger / metabolism
  • Tomography, X-Ray Computed
  • Tooth / diagnostic imaging
  • Transfection

Substances

  • Core Binding Factor Alpha 1 Subunit
  • RNA, Messenger
  • RUNX2 protein, human
  • RNA