Characterization of human DNA sequences synthesized at the onset of S-phase

Nucleic Acids Res. 1987 Dec 23;15(24):10211-32. doi: 10.1093/nar/15.24.10211.

Abstract

We developed a method of enrichment for DNA replicated at the onset of S-phase in synchronized human HL60 cells. About 200 such sequences were cloned. The analysis of this selected DNA sample showed that: 1) the cloned DNA fragments derive from a limited number (750-1500) of replicons; 2) there is no extensive homology between different DNA fragments; 3) they are not significantly enriched in highly repeated sequences; 4) they are enriched in snap-back (Cot = o) DNA. The sequence of the longest fragment revealed the presence of numerous signals collected in a few hundred nucleotides: 1) homology with the origin of replication of human Papovaviruses usually associated with potential stem-loop structures; 2) binding sites for known transcription factors and for another nuclear factor; 3) potential binding sites for the chromosome "scaffold".

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Binding Sites
  • Cloning, Molecular
  • DNA Replication*
  • DNA Restriction Enzymes
  • DNA-Binding Proteins / metabolism
  • Humans
  • Interphase*
  • Molecular Sequence Data
  • Nucleic Acid Conformation
  • Regulatory Sequences, Nucleic Acid
  • Transcription Factors / metabolism
  • Transcription, Genetic
  • Tumor Cells, Cultured

Substances

  • DNA-Binding Proteins
  • Transcription Factors
  • DNA Restriction Enzymes