Real-Time Analysis of Folding upon Binding of a Disordered Protein by Using Dissolution DNP NMR Spectroscopy

Angew Chem Int Ed Engl. 2017 Jun 12;56(25):7070-7073. doi: 10.1002/anie.201700464. Epub 2017 May 16.

Abstract

The kinase inhibitory domain of the cell cycle regulatory protein p27Kip1 (p27) was nuclear spin hyperpolarized using dissolution dynamic nuclear polarization (D-DNP). While intrinsically disordered in isolation, p27 adopts secondary structural motifs, including an α-helical structure, upon binding to cyclin-dependent kinase 2 (Cdk2)/cyclin A. The sensitivity gains obtained with hyperpolarization enable the real-time observation of 13 C NMR signals during p27 folding upon binding to Cdk2/cyclin A on a time scale of several seconds. Time-dependent intensity changes are dependent on the extent of folding and binding, as manifested in differential spin relaxation. The analysis of signal decay rates suggests the existence of a partially folded p27 intermediate during the timescale of the D-DNP NMR experiment.

Keywords: NMR spectroscopy; hyperpolarization; intrinsically disordered proteins; protein folding; protein-protein interactions.

MeSH terms

  • Cyclin A / chemistry
  • Cyclin-Dependent Kinase 2 / chemistry
  • Cyclin-Dependent Kinase Inhibitor p27 / chemistry
  • Intrinsically Disordered Proteins / chemistry*
  • Magnetic Resonance Spectroscopy / methods*
  • Protein Binding
  • Protein Folding*
  • Protein Structure, Secondary
  • Solubility
  • Time Factors

Substances

  • Cyclin A
  • Intrinsically Disordered Proteins
  • Cyclin-Dependent Kinase Inhibitor p27
  • Cyclin-Dependent Kinase 2