Noncoding after All: Biases in Proteomics Data Do Not Explain Observed Absence of lncRNA Translation Products

J Proteome Res. 2017 Jul 7;16(7):2508-2515. doi: 10.1021/acs.jproteome.7b00085. Epub 2017 Jun 5.

Abstract

Over the past decade, long noncoding RNAs (lncRNAs) have emerged as novel functional entities of the eukaryotic genome. However, the scientific community remains divided over the amount of true noncoding transcripts among the large number of unannotated transcripts identified by recent large scale and deep RNA-sequencing efforts. Here, we systematically exclude possible technical reasons underlying the absence of lncRNA-encoded proteins in mass spectrometry data sets, strongly suggesting that the large majority of lncRNAs is indeed not translated.

Keywords: lncRNA; mass spectrometry; micropeptide; msms; public data; translation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Eukaryota
  • Gene Expression Regulation
  • Genome*
  • High-Throughput Nucleotide Sequencing
  • Humans
  • Mass Spectrometry
  • Protein Biosynthesis*
  • Proteins / analysis*
  • Proteins / genetics
  • Proteins / metabolism
  • Proteomics / methods*
  • Quality Control
  • RNA, Long Noncoding / genetics*
  • RNA, Long Noncoding / metabolism

Substances

  • Proteins
  • RNA, Long Noncoding