Germline and somatic mutations in homologous recombination genes among Chinese ovarian cancer patients detected using next-generation sequencing

J Gynecol Oncol. 2017 Jul;28(4):e39. doi: 10.3802/jgo.2017.28.e39.

Abstract

Objective: To define genetic profiling of homologous recombination (HR) deficiency in Chinese ovarian cancer patients.

Methods: we have applied next-generation sequencing to detect deleterious mutations through all exons in 31 core HR genes. Paired whole blood and frozen tumor samples from 50 Chinese women diagnosed with epithelial ovarian carcinomas were tested to identify both germline and somatic variants.

Results: Deleterious germline HR-mutations were identified in 36% of the ovarian cancer patients. Another 5 patients had only somatic mutations. BRCA2 was most frequently mutated. Three out of the 5 somatic mutations were in RAD genes and a wider distribution of other HR genes was involved in non-serous carcinomas. BRCA1/2-mutation carriers had favorable platinum sensitivity (relative risk, 1.57, p<0.05), resulting in a 100% remission probability and survival rate. In contrast, mutations in other HR genes predicted poor prognosis. However, multivariate analysis demonstrated that platinum sensitivity and optimal cytoreduction were the independent impact factors influencing survival (hazards ratio, 0.053) and relapse (hazards ratio, 0.247), respectively.

Conclusion: our results suggest that a more comprehensive profiling of HR defect than merely BRCA1/2 could help elucidate tumor heterogeneity and lead to better stratification of ovarian cancer patients for individualized clinical management.

Keywords: BRCA 1; BRCA 2; Epithelial Ovarian Cancer; Homologous Recombination; Next-generation Sequencing.

MeSH terms

  • Acid Anhydride Hydrolases
  • Adult
  • Aged
  • Antineoplastic Agents / therapeutic use
  • Ataxia Telangiectasia Mutated Proteins / genetics
  • Carcinoma, Ovarian Epithelial
  • Checkpoint Kinase 2 / genetics
  • China
  • Cytoreduction Surgical Procedures
  • DNA Helicases / genetics
  • DNA Mutational Analysis / methods
  • DNA Repair Enzymes / genetics
  • DNA-Binding Proteins / genetics
  • Disease-Free Survival
  • Exome
  • Female
  • Genes, BRCA1*
  • Genes, BRCA2*
  • Germ-Line Mutation*
  • Homologous Recombination*
  • Humans
  • INDEL Mutation
  • Middle Aged
  • Neoplasm Recurrence, Local / etiology*
  • Neoplasm, Residual
  • Neoplasms, Glandular and Epithelial / genetics*
  • Neoplasms, Glandular and Epithelial / therapy
  • Nuclear Proteins / genetics
  • Ovarian Neoplasms / genetics*
  • Ovarian Neoplasms / therapy
  • Platinum Compounds / therapeutic use
  • Polymorphism, Single Nucleotide
  • Rad52 DNA Repair and Recombination Protein / genetics
  • Survival Rate

Substances

  • Antineoplastic Agents
  • DNA-Binding Proteins
  • Nuclear Proteins
  • Platinum Compounds
  • RAD52 protein, human
  • RAD54B protein, human
  • Rad52 DNA Repair and Recombination Protein
  • Checkpoint Kinase 2
  • ATR protein, human
  • Ataxia Telangiectasia Mutated Proteins
  • CHEK2 protein, human
  • Acid Anhydride Hydrolases
  • RAD50 protein, human
  • DNA Helicases
  • DNA Repair Enzymes