The UbiK protein is an accessory factor necessary for bacterial ubiquinone (UQ) biosynthesis and forms a complex with the UQ biogenesis factor UbiJ

J Biol Chem. 2017 Jul 14;292(28):11937-11950. doi: 10.1074/jbc.M117.789164. Epub 2017 May 30.

Abstract

Ubiquinone (UQ), also referred to as coenzyme Q, is a widespread lipophilic molecule in both prokaryotes and eukaryotes in which it primarily acts as an electron carrier. Eleven proteins are known to participate in UQ biosynthesis in Escherichia coli, and we recently demonstrated that UQ biosynthesis requires additional, nonenzymatic factors, some of which are still unknown. Here, we report on the identification of a bacterial gene, yqiC, which is required for efficient UQ biosynthesis, and which we have renamed ubiK Using several methods, we demonstrated that the UbiK protein forms a complex with the C-terminal part of UbiJ, another UQ biogenesis factor we previously identified. We found that both proteins are likely to contribute to global UQ biosynthesis rather than to a specific biosynthetic step, because both ubiK and ubiJ mutants accumulated octaprenylphenol, an early intermediate of the UQ biosynthetic pathway. Interestingly, we found that both proteins are dispensable for UQ biosynthesis under anaerobiosis, even though they were expressed in the absence of oxygen. We also provide evidence that the UbiK-UbiJ complex interacts with palmitoleic acid, a major lipid in E. coli Last, in Salmonella enterica, ubiK was required for proliferation in macrophages and virulence in mice. We conclude that although the role of the UbiK-UbiJ complex remains unknown, our results support the hypothesis that UbiK is an accessory factor of Ubi enzymes and facilitates UQ biosynthesis by acting as an assembly factor, a targeting factor, or both.

Keywords: Escherichia coli (E. coli); bioenergetics; coenzyme Q10 (CoQ10); electron transfer; microbiology; ubiquinone.

MeSH terms

  • Animals
  • BALB 3T3 Cells
  • Bacterial Load
  • Bacterial Proteins / chemistry
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism*
  • Carrier Proteins / chemistry
  • Carrier Proteins / genetics
  • Carrier Proteins / metabolism*
  • Escherichia coli / growth & development
  • Escherichia coli / metabolism*
  • Escherichia coli Proteins / chemistry
  • Escherichia coli Proteins / genetics
  • Escherichia coli Proteins / metabolism*
  • Fatty Acids, Monounsaturated / metabolism
  • Female
  • Gene Deletion
  • Humans
  • Intracellular Signaling Peptides and Proteins
  • Macrophages / immunology
  • Macrophages / microbiology*
  • Mice
  • Models, Molecular*
  • Peptide Fragments / chemistry
  • Peptide Fragments / genetics
  • Peptide Fragments / metabolism
  • Protein Interaction Domains and Motifs
  • Protein Multimerization
  • RAW 264.7 Cells
  • Recombinant Fusion Proteins / chemistry
  • Recombinant Fusion Proteins / metabolism
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / metabolism
  • Salmonella Infections / microbiology
  • Salmonella enterica / growth & development
  • Salmonella enterica / isolation & purification
  • Salmonella enterica / metabolism*
  • Salmonella enterica / pathogenicity
  • Spleen / microbiology
  • Terminology as Topic
  • Ubiquinone / biosynthesis*
  • Virulence

Substances

  • Bacterial Proteins
  • Carrier Proteins
  • Escherichia coli Proteins
  • Fatty Acids, Monounsaturated
  • Intracellular Signaling Peptides and Proteins
  • Peptide Fragments
  • Recombinant Fusion Proteins
  • Recombinant Proteins
  • UbiJ protein, E coli
  • UbiK protein, E coli
  • Ubiquinone
  • palmitoleic acid

Associated data

  • PDB/3PP5
  • PDB/3P8C
  • PDB/4LL7
  • PDB/4JGX
  • PDB/3QH9
  • PDB/1M1J