Complete genome sequence of multidrug-resistant Staphylococcus cohnii ssp. urealyticus strain SNUDS-2 isolated from farmed duck, Republic of Korea

J Glob Antimicrob Resist. 2017 Sep:10:37-39. doi: 10.1016/j.jgar.2017.05.008. Epub 2017 Jun 1.

Abstract

Objectives: Staphylococcus cohnii has become increasingly recognized as a potential pathogen of clinically significant nosocomial and farm animal infections. This study was designed to determine the genome of a multidrug-resistant S. cohnii subsp. urealyticus strain SNUDS-2 isolated from a farmed duck in Korea.

Methods: Genomic DNA was sequenced using the PacBio RS II system. The complete genome was annotated and the presence of antimicrobial resistance and virulence genes were identified.

Results: The annotated 2,625,703 bp genome contained various antimicrobial resistance genes conferring resistance to β-lactam, aminoglycosides, fluoroquinolones, phenicols and trimethoprim. The virulence-associated three synergistic hemolysins have been identified in the strain.

Conclusions: To the best of our knowledge, this is the first complete genome of S. cohnii, and will provide important insights into the biodiversity of CoNS and valuable information for the control of this emerging pathogen.

Keywords: CoNS; Multidrug resistance; South Korea; Staphylococcus cohnii ssp. Urealyticus.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Animals, Domestic / microbiology
  • Anti-Bacterial Agents / pharmacology
  • Base Sequence
  • DNA, Bacterial / analysis
  • Drug Resistance, Multiple, Bacterial / genetics*
  • Ducks / microbiology*
  • Farms
  • Female
  • Hemolysin Proteins / genetics
  • Microbial Sensitivity Tests
  • Phylogeny*
  • RNA, Ribosomal, 16S / genetics
  • Republic of Korea
  • Staphylococcal Infections / microbiology
  • Staphylococcal Infections / veterinary
  • Staphylococcus / classification*
  • Staphylococcus / drug effects
  • Staphylococcus / genetics*
  • Staphylococcus / isolation & purification*
  • Virulence / genetics
  • Whole Genome Sequencing

Substances

  • Anti-Bacterial Agents
  • DNA, Bacterial
  • Hemolysin Proteins
  • RNA, Ribosomal, 16S