Biosynthesis of isonitrile lipopeptides by conserved nonribosomal peptide synthetase gene clusters in Actinobacteria

Proc Natl Acad Sci U S A. 2017 Jul 3;114(27):7025-7030. doi: 10.1073/pnas.1705016114. Epub 2017 Jun 20.

Abstract

A putative lipopeptide biosynthetic gene cluster is conserved in many species of Actinobacteria, including Mycobacterium tuberculosis and M. marinum, but the specific function of the encoding proteins has been elusive. Using both in vivo heterologous reconstitution and in vitro biochemical analyses, we have revealed that the five encoding biosynthetic enzymes are capable of synthesizing a family of isonitrile lipopeptides (INLPs) through a thio-template mechanism. The biosynthesis features the generation of isonitrile from a single precursor Gly promoted by a thioesterase and a nonheme iron(II)-dependent oxidase homolog and the acylation of both amino groups of Lys by the same isonitrile acyl chain facilitated by a single condensation domain of a nonribosomal peptide synthetase. In addition, the deletion of INLP biosynthetic genes in M. marinum has decreased the intracellular metal concentration, suggesting the role of this biosynthetic gene cluster in metal transport.

Keywords: biosynthetic enzymes; metal transport; mycobacteria.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Actinobacteria / enzymology*
  • Actinobacteria / genetics
  • Biological Transport
  • Catalysis
  • Chromatography
  • Chromatography, Ion Exchange
  • Escherichia coli / enzymology
  • Escherichia coli / genetics
  • Fatty Acids / chemistry
  • Gene Deletion
  • Lipopeptides / biosynthesis*
  • Lysine / chemistry
  • Metals
  • Multigene Family*
  • Mutation
  • Mycobacterium marinum / enzymology
  • Mycobacterium marinum / genetics
  • Mycobacterium tuberculosis / enzymology*
  • Mycobacterium tuberculosis / genetics
  • Peptide Synthases / genetics
  • Peptide Synthases / metabolism*
  • Protein Domains
  • Ribosomes / chemistry

Substances

  • Fatty Acids
  • Lipopeptides
  • Metals
  • Peptide Synthases
  • Lysine