Discovery and Evaluation of Anti-Fibrinolytic Plasmin Inhibitors Derived from 5-(4-Piperidyl)isoxazol-3-ol (4-PIOL)

J Chem Inf Model. 2017 Jul 24;57(7):1703-1714. doi: 10.1021/acs.jcim.7b00255. Epub 2017 Jul 12.

Abstract

Inhibition of plasmin has been found to effectively reduce fibrinolysis and to avoid hemorrhage. This can be achieved by addressing its kringle 1 domain with the known drug and lysine analogue tranexamic acid. Guided by shape similarities toward a previously discovered lead compound, 5-(4-piperidyl)isoxazol-3-ol, a set of 16 structurally similar compounds was assembled and investigated. Successfully, in vitro measurements revealed one compound, 5-(4-piperidyl)isothiazol-3-ol, superior in potency compared to the initial lead. Furthermore, a strikingly high correlation (R2 = 0.93) between anti-fibrinolytic activity and kringle 1 binding affinity provided strong support for the hypothesized inhibition mechanism, as well as revealing opportunities to fine-tune biological effects through minor structural modifications. Several different ligand-based (Freeform, shape, and electrostatic-based similarities) and structure-based methods (e.g., Posit, MM/GBSA, FEP+) were used to retrospectively predict the binding affinities. A combined method, molecular alignment using Posit and scoring with Tcombo, lead to the highest coefficient of determination (R2 = 0.6).

MeSH terms

  • Antifibrinolytic Agents / chemistry*
  • Antifibrinolytic Agents / metabolism
  • Antifibrinolytic Agents / pharmacology*
  • Drug Discovery*
  • Fibrinolysin / antagonists & inhibitors*
  • Fibrinolysin / chemistry
  • Fibrinolysin / metabolism
  • Isoxazoles / chemistry*
  • Isoxazoles / metabolism
  • Isoxazoles / pharmacology*
  • Molecular Docking Simulation
  • Piperidines / chemistry*
  • Piperidines / metabolism
  • Piperidines / pharmacology*
  • Protein Domains
  • Quantitative Structure-Activity Relationship
  • Thermodynamics

Substances

  • Antifibrinolytic Agents
  • Isoxazoles
  • Piperidines
  • 5-(4-piperidyl)isoxazol-3-ol
  • Fibrinolysin