The crystal structure of full-length Sizzled from Xenopus laevis yields insights into Wnt-antagonistic function of secreted Frizzled-related proteins

J Biol Chem. 2017 Sep 29;292(39):16055-16069. doi: 10.1074/jbc.M117.791756. Epub 2017 Aug 14.

Abstract

The Wnt-signaling pathway is crucial to cell proliferation, differentiation, and migration. The secreted Frizzled-related proteins (sFRPs) represent the largest family of secreted Wnt inhibitors. However, their function in antagonizing Wnt signaling has remained somewhat controversial. Here, we report the crystal structure of Sizzled from Xenopus laevis, the first full-length structure of an sFRP. Tethered by an inter-domain disulfide bond and a linker, the N-terminal cysteine-rich domain (CRD) and the C-terminal netrin-like domain (NTR) of Sizzled are arranged in a tandem fashion, with the NTR domain occluding the groove of CRD for Wnt accessibility. A Dual-Luciferase assay demonstrated that removing the NTR domain and replacing the CRD groove residues His-116 and His-118 with aromatic residues may significantly enhance antagonistic function of Sizzled in inhibiting Wnt3A signaling. Sizzled is a monomer in solution, and Sizzled CRD exhibited different packing in the crystal, suggesting that sFRPs do not have a conserved CRD dimerization mode. Distinct from the canonical NTR domain, the Sizzled NTR adopts a novel α/β folding with two perpendicular helices facing the central mixed β-sheet. The subgroup of human sFRP1/2/5 and Sizzled should have a similar NTR domain that features a highly positively charged region, opposite the NTR-CRD interface, suggesting that the NTR domain in human sFRPs, at least sFRP1/2/5, is unlikely to bind to Wnt but is likely involved in biphasic Wnt signaling modulation. In summary, the Sizzled structure provides the first insights into how the CRD and the NTR domains relate to each other for modulating Wnt-antagonistic function of sFRPs.

Keywords: Sizzled; Wnt signaling; antagonistic function; crystal structure; protein crystallization; recombinant protein expression; sFRPs; structure-function.

Publication types

  • Comparative Study

MeSH terms

  • Amino Acid Sequence
  • Amino Acid Substitution
  • Animals
  • Binding Sites
  • Conserved Sequence
  • Crystallography, X-Ray
  • Databases, Protein
  • Dimerization
  • Down-Regulation*
  • Genes, Reporter
  • HEK293 Cells
  • Humans
  • Models, Molecular*
  • Mutation
  • Peptide Fragments / chemistry
  • Peptide Fragments / genetics
  • Peptide Fragments / metabolism
  • Protein Conformation
  • Protein Interaction Domains and Motifs
  • Receptors, Cell Surface / chemistry
  • Receptors, Cell Surface / genetics
  • Receptors, Cell Surface / metabolism*
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / metabolism
  • Sequence Alignment
  • Wnt Proteins / antagonists & inhibitors
  • Wnt Proteins / chemistry
  • Wnt Proteins / metabolism*
  • Wnt Signaling Pathway*
  • Xenopus Proteins / antagonists & inhibitors
  • Xenopus Proteins / chemistry
  • Xenopus Proteins / genetics
  • Xenopus Proteins / metabolism*
  • Xenopus laevis / metabolism*

Substances

  • FZD8 protein, Xenopus
  • Peptide Fragments
  • Receptors, Cell Surface
  • Recombinant Proteins
  • Wnt Proteins
  • Xenopus Proteins
  • szl protein, Xenopus
  • wnt8a protein, Xenopus

Associated data

  • PDB/5hce
  • PDB/4F0A
  • PDB/1ijx