Primate lentiviruses use at least three alternative strategies to suppress NF-κB-mediated immune activation

PLoS Pathog. 2017 Aug 31;13(8):e1006598. doi: 10.1371/journal.ppat.1006598. eCollection 2017 Aug.

Abstract

Primate lentiviruses have evolved sophisticated strategies to suppress the immune response of their host species. For example, HIV-2 and most simian immunodeficiency viruses (SIVs) use their accessory protein Nef to prevent T cell activation and antiviral gene expression by downmodulating the T cell receptor CD3. This Nef function was lost in HIV-1 and other vpu-encoding viruses suggesting that the acquisition of Vpu-mediated NF-κB inhibition reduced the selection pressure for inhibition of T cell activation by Nef. To obtain further insights into the modulation of NF-κB activity by primate lentiviral accessory factors, we analyzed 32 Vpr proteins from a large panel of divergent primate lentiviruses. We found that those of SIVcol and SIVolc infecting Colobinae monkeys showed the highest efficacy in suppressing NF-κB activation. Vpr-mediated inhibition of NF-κB resulted in decreased IFNβ promoter activity and suppressed type I IFN induction in virally infected primary cells. Interestingly, SIVcol and SIVolc differ from all other primate lentiviruses investigated by the lack of both, a vpu gene and efficient Nef-mediated downmodulation of CD3. Thus, primate lentiviruses have evolved at least three alternative strategies to inhibit NF-κB-dependent immune activation. Functional analyses showed that the inhibitory activity of SIVolc and SIVcol Vprs is independent of DCAF1 and the induction of cell cycle arrest. While both Vprs target the IKK complex or a factor further downstream in the NF-κB signaling cascade, only SIVolc Vpr stabilizes IκBα and inhibits p65 phosphorylation. Notably, only de-novo synthesized but not virion-associated Vpr suppressed the activation of NF-κB, thus enabling NF-κB-dependent initiation of viral gene transcription during early stages of the replication cycle, while minimizing antiviral gene expression at later stages. Our findings highlight the key role of NF-κB in antiviral immunity and demonstrate that primate lentiviruses follow distinct evolutionary paths to modulate NF-κB-dependent expression of viral and antiviral genes.

MeSH terms

  • Animals
  • Apoptosis / physiology
  • Blotting, Western
  • Cell Line
  • Colobus
  • Flow Cytometry
  • HIV / immunology
  • HIV Infections / immunology*
  • Humans
  • Immune Evasion / immunology*
  • Lymphocyte Activation / immunology
  • NF-kappa B / immunology*
  • Polymerase Chain Reaction
  • Simian Acquired Immunodeficiency Syndrome / immunology*
  • Simian Immunodeficiency Virus / immunology

Substances

  • NF-kappa B

Grants and funding

DS and FK were funded by the Deutsche Forschungsgemeinschaft (http://www.dfg.de/; SPP1923). FK was supported by an Advanced Grant of the European Research Council (https://erc.europa.eu/). NR was supported by the Swiss National Science Foundation (grant 31003A_132863/1). CVL is "Directeur de Recherches" of the FRS-FNRS (Belgium). BVD is a postdoctoral fellow from the ARC. CVL acknowledges grant support from the Belgian Fund for Scientific Research (FRS -FNRS), the Fondation Roi Baudouin, the Internationale Brachet Stiftung and the University of Brussels [Action de Recherche Concertée (ARC) grant]. DH and ER were supported by the International Graduate School in Molecular Medicine Ulm (IGradU). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.