Typing and comparative genome analysis of Brucella melitensis isolated from Lebanon

FEMS Microbiol Lett. 2017 Oct 16;364(19). doi: 10.1093/femsle/fnx199.

Abstract

Brucella melitensis is the main causative agent of the zoonotic disease brucellosis. This study aimed at typing and characterizing genetic variation in 33 Brucella isolates recovered from patients in Lebanon. Bruce-ladder multiplex PCR and PCR-RFLP of omp31, omp2a and omp2b were performed. Sixteen representative isolates were chosen for draft-genome sequencing and analyzed to determine variations in virulence, resistance, genomic islands, prophages and insertion sequences. Comparative whole-genome single nucleotide polymorphism analysis was also performed. The isolates were confirmed to be B. melitensis. Genome analysis revealed multiple virulence determinants and efflux pumps. Genome comparisons and single nucleotide polymorphisms divided the isolates based on geographical distribution but revealed high levels of similarity between the strains. Sequence divergence in B. melitensis was mainly due to lateral gene transfer of mobile elements. This is the first report of an in-depth genomic characterization of B. melitensis in Lebanon.

Keywords: Brucella melitensis; Brucellosis; PCR; RFLP; SNPs; draft-genome sequencing.

Publication types

  • Comparative Study

MeSH terms

  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Bacterial Typing Techniques
  • Brucella melitensis / classification
  • Brucella melitensis / genetics
  • Brucella melitensis / isolation & purification*
  • Brucellosis / microbiology*
  • DNA, Bacterial
  • Genetic Variation
  • Genome, Bacterial*
  • Genomics
  • Genotype
  • Humans
  • Lebanon
  • Multiplex Polymerase Chain Reaction
  • Phylogeny
  • Polymorphism, Single Nucleotide

Substances

  • Bacterial Proteins
  • DNA, Bacterial