Genomics-Driven Discovery of Chlorinated Cyclic Hexapeptides Ulleungmycins A and B from a Streptomyces Species

J Nat Prod. 2017 Nov 22;80(11):3025-3031. doi: 10.1021/acs.jnatprod.7b00660. Epub 2017 Oct 30.

Abstract

Analysis of the genome sequence of Streptomyces sp. KCB13F003 showed the presence of a cryptic gene cluster encoding flavin-dependent halogenase and nonribosomal peptide synthetase. Pleiotropic approaches using multiple culture media followed by LC-MS-guided isolation and spectroscopic analysis enabled the identification of two new chlorinated cyclic hexapeptides, ulleungmycins A and B (1 and 2). Their structures, including absolute configurations, were determined by 1D and 2D NMR techniques, advanced Marfey's analysis, and GITC derivatization. The new peptides, featuring unusual amino acids 5-chloro-l-tryptophan and d-homoleucine, exhibited moderate antibacterial activities against Gram-positive pathogenic bacteria including methicillin-resistant and quinolone-resistant Staphylococcus aureus.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Anti-Bacterial Agents / chemistry
  • Chromatography, Liquid
  • Flavins / metabolism
  • Genomics
  • Gram-Positive Bacteria / drug effects
  • Hydrocarbons, Chlorinated
  • Methicillin Resistance / drug effects
  • Methicillin-Resistant Staphylococcus aureus / drug effects
  • Microbial Sensitivity Tests
  • Molecular Structure
  • Nuclear Magnetic Resonance, Biomolecular
  • Oxidoreductases / metabolism
  • Peptide Synthases / metabolism
  • Peptides, Cyclic / chemistry
  • Peptides, Cyclic / isolation & purification*
  • Staphylococcal Infections
  • Staphylococcus aureus / drug effects
  • Streptomyces / chemistry*
  • Streptomyces / genetics
  • Tryptophan / metabolism

Substances

  • Anti-Bacterial Agents
  • Flavins
  • Hydrocarbons, Chlorinated
  • Peptides, Cyclic
  • ulleungmycin A
  • ulleungmycin B
  • Tryptophan
  • Oxidoreductases
  • Peptide Synthases
  • non-ribosomal peptide synthase