Conserved salt-bridge competition triggered by phosphorylation regulates the protein interactome

Proc Natl Acad Sci U S A. 2017 Dec 19;114(51):13453-13458. doi: 10.1073/pnas.1711543114. Epub 2017 Dec 5.

Abstract

Phosphorylation is a major regulator of protein interactions; however, the mechanisms by which regulation occurs are not well understood. Here we identify a salt-bridge competition or "theft" mechanism that enables a phospho-triggered swap of protein partners by Raf Kinase Inhibitory Protein (RKIP). RKIP transitions from inhibiting Raf-1 to inhibiting G-protein-coupled receptor kinase 2 upon phosphorylation, thereby bridging MAP kinase and G-Protein-Coupled Receptor signaling. NMR and crystallography indicate that a phosphoserine, but not a phosphomimetic, competes for a lysine from a preexisting salt bridge, initiating a partial unfolding event and promoting new protein interactions. Structural elements underlying the theft occurred early in evolution and are found in 10% of homo-oligomers and 30% of hetero-oligomers including Bax, Troponin C, and Early Endosome Antigen 1. In contrast to a direct recognition of phosphorylated residues by binding partners, the salt-bridge theft mechanism represents a facile strategy for promoting or disrupting protein interactions using solvent-accessible residues, and it can provide additional specificity at protein interfaces through local unfolding or conformational change.

Keywords: Raf Kinase Inhibitory Protein; conformational change; phospho-swap; protein interaction; salt-bridge competition.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Substitution
  • Animals
  • Conserved Sequence*
  • Evolution, Molecular
  • Humans
  • Lysine / genetics
  • Lysine / metabolism
  • Phosphatidylethanolamine Binding Protein / chemistry
  • Phosphatidylethanolamine Binding Protein / genetics
  • Phosphatidylethanolamine Binding Protein / metabolism
  • Phosphorylation
  • Protein Binding
  • Protein Interaction Maps*
  • Protein Processing, Post-Translational*
  • Serine / genetics
  • Serine / metabolism
  • Troponin C / chemistry
  • Troponin C / genetics
  • Troponin C / metabolism
  • Vesicular Transport Proteins / chemistry
  • Vesicular Transport Proteins / genetics
  • Vesicular Transport Proteins / metabolism
  • bcl-2-Associated X Protein / chemistry
  • bcl-2-Associated X Protein / genetics
  • bcl-2-Associated X Protein / metabolism

Substances

  • Phosphatidylethanolamine Binding Protein
  • Troponin C
  • Vesicular Transport Proteins
  • bcl-2-Associated X Protein
  • early endosome antigen 1
  • Serine
  • Lysine

Associated data

  • PDB/6ENS
  • PDB/6ENT