Phylogeny and bioactivity of epiphytic Gram-positive bacteria isolated from three co-occurring antarctic macroalgae

Antonie Van Leeuwenhoek. 2018 Sep;111(9):1543-1555. doi: 10.1007/s10482-018-1044-6. Epub 2018 Feb 19.

Abstract

Marine macroalgae are emerging as an untapped source of novel microbial diversity and, therefore, of new bioactive secondary metabolites. This study was aimed at assessing the diversity and antimicrobial activity of the culturable Gram-positive bacteria associated with the surface of three co-occurring Antarctic macroalgae. Specimens of Adenocystis utricularis (brown alga), Iridaea cordata (red alga) and Monostroma hariotii (green alga) were collected from the intertidal zone of King George Island, Antarctica. Gram-positive bacteria were investigated by cultivation-based methods and 16S rRNA gene sequencing, and screened for antimicrobial activity against a panel of pathogenic microorganisms. Isolates were found to belong to 12 families, with a dominance of Microbacteriaceae and Micrococcaceae. Seventeen genera of Actinobacteria and 2 of Firmicutes were cultured from the three macroalgae, containing 29 phylotypes. Three phylotypes within Actinobacteria were regarded as potentially novel species. Sixteen isolates belonging to the genera Agrococcus, Arthrobacter, Micrococcus, Pseudarthrobacter, Pseudonocardia, Sanguibacter, Staphylococcus, Streptomyces and Tessaracoccus exhibited antibiotic activity against at least one of the indicator strains. The bacterial phylotype composition was distinct among the three macroalgae species, suggesting that these macroalgae host species-specific Gram-positive associates. The results highlight the importance of Antarctic macroalgae as a rich source of Gram-positive bacterial diversity and potentially novel species, and a reservoir of bacteria producing biologically active compounds with pharmacological potential.

Keywords: Culturable; Culturomics; Microbiome; Nocardiaceae; Pseudonocardiaceae; Streptomycetaceae.

MeSH terms

  • Antarctic Regions
  • Anti-Bacterial Agents / isolation & purification
  • Anti-Bacterial Agents / pharmacology*
  • Biological Products / isolation & purification
  • Biological Products / pharmacology*
  • Chlorophyta / microbiology
  • Genome, Bacterial
  • Gram-Positive Bacteria / classification*
  • Gram-Positive Bacteria / genetics
  • Gram-Positive Bacteria / isolation & purification
  • Gram-Positive Bacteria / physiology*
  • Host Specificity
  • Metagenomics
  • Phaeophyceae / microbiology
  • Phylogeny
  • RNA, Ribosomal, 16S / genetics
  • Rhodophyta / microbiology
  • Seaweed / microbiology*

Substances

  • Anti-Bacterial Agents
  • Biological Products
  • RNA, Ribosomal, 16S