The Cancer Mutation D83V Induces an α-Helix to β-Strand Conformation Switch in MEF2B

J Mol Biol. 2018 Apr 13;430(8):1157-1172. doi: 10.1016/j.jmb.2018.02.012. Epub 2018 Feb 22.

Abstract

MEF2B is a major target of somatic mutations in non-Hodgkin lymphoma. Most of these mutations are non-synonymous substitutions of surface residues in the MADS-box/MEF2 domain. Among them, D83V is the most frequent mutation found in tumor cells. The link between this hotspot mutation and cancer is not well understood. Here we show that the D83V mutation induces a dramatic α-helix to β-strand switch in the MEF2 domain. Located in an α-helix region rich in β-branched residues, the D83V mutation not only removes the extensive helix stabilization interactions but also introduces an additional β-branched residue that further shifts the conformation equilibrium from α-helix to β-strand. Cross-database analyses of cancer mutations and chameleon sequences revealed a number of well-known cancer targets harboring β-strand favoring mutations in chameleon α-helices, suggesting a commonality of such conformational switch in certain cancers and a new factor to consider when stratifying the rapidly expanding cancer mutation data.

Keywords: MEF2B; cancer mutation; lymphoma; metamorphic protein structure; protein conformation change.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Amino Acid Substitution*
  • Crystallography, X-Ray
  • Humans
  • Lymphoma, Non-Hodgkin / genetics*
  • MEF2 Transcription Factors / chemistry
  • MEF2 Transcription Factors / genetics
  • Models, Molecular
  • Protein Conformation, alpha-Helical
  • Protein Conformation, beta-Strand
  • Protein Domains

Substances

  • MEF2 Transcription Factors
  • MEF2B protein, human