Two distinct conformational states define the interaction of human RAD51-ATP with single-stranded DNA

EMBO J. 2018 Apr 3;37(7):e98162. doi: 10.15252/embj.201798162. Epub 2018 Mar 5.

Abstract

An essential mechanism for repairing DNA double-strand breaks is homologous recombination (HR). One of its core catalysts is human RAD51 (hRAD51), which assembles as a helical nucleoprotein filament on single-stranded DNA, promoting DNA-strand exchange. Here, we study the interaction of hRAD51 with single-stranded DNA using a single-molecule approach. We show that ATP-bound hRAD51 filaments can exist in two different states with different contour lengths and with a free-energy difference of ~4 kBT per hRAD51 monomer. Upon ATP hydrolysis, the filaments convert into a disassembly-competent ADP-bound configuration. In agreement with the single-molecule analysis, we demonstrate the presence of two distinct protomer interfaces in the crystal structure of a hRAD51-ATP filament, providing a structural basis for the two conformational states of the filament. Together, our findings provide evidence that hRAD51-ATP filaments can exist in two interconvertible conformational states, which might be functionally relevant for DNA homology recognition and strand exchange.

Keywords: DNA repair; RAD51; homologous recombination; single‐stranded DNA.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenosine Triphosphate / chemistry
  • Adenosine Triphosphate / metabolism*
  • Crystallography, X-Ray
  • DNA / metabolism
  • DNA Breaks, Double-Stranded
  • DNA Repair / physiology
  • DNA Replication / physiology
  • DNA, Single-Stranded / chemistry
  • DNA, Single-Stranded / metabolism*
  • DNA-Binding Proteins / metabolism*
  • Homologous Recombination / physiology*
  • Models, Molecular
  • Molecular Conformation
  • Nucleoproteins / metabolism
  • Rad51 Recombinase / chemistry
  • Rad51 Recombinase / metabolism*

Substances

  • DNA, Single-Stranded
  • DNA-Binding Proteins
  • Nucleoproteins
  • Adenosine Triphosphate
  • DNA
  • RAD51 protein, human
  • Rad51 Recombinase