Characterisation of a putative glutamate 5-kinase from Leishmania donovani

FEBS J. 2018 Jul;285(14):2662-2678. doi: 10.1111/febs.14511. Epub 2018 May 27.

Abstract

Previous metabolic studies have demonstrated that leishmania parasites are able to synthesise proline from glutamic acid and threonine from aspartic acid. The first committed step in both biosynthetic pathways involves an amino acid kinase, either a glutamate 5-kinase (G5K; EC2.7.2.11) or an aspartokinase (EC2.7.2.4). Bioinformatic analysis of multiple leishmania genomes identifies a single amino acid-kinase gene (LdBPK 262740.1) variously annotated as either a putative glutamate or aspartate kinase. To establish the catalytic function of this Leishmania donovani gene product, we have determined the physical and kinetic properties of the recombinant enzyme purified from Escherichia coli. The findings indicate that the enzyme is a bona fide G5K with no activity as an aspartokinase. Tetrameric G5K displays kinetic behaviour similar to its bacterial orthologues and is allosterically regulated by proline, the end product of the pathway. The structure-activity relationships of proline analogues as inhibitors are broadly similar to the bacterial enzyme. However, unlike G5K from E. coli, leishmania G5K lacks a C-terminal PUA (pseudouridine synthase and archaeosine transglycosylase) domain and does not undergo higher oligomerisation in the presence of proline. Gene replacement studies are suggestive, but not conclusive that G5K is essential.

Enzymes: Glutamate 5-kinase (EC2.7.2.11); aspartokinase (EC2.7.2.4).

Keywords: Leishmania; biochemical pathway; drug target; inhibitors; proline biosynthesis.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Aspartic Acid / metabolism
  • Biocatalysis
  • Cloning, Molecular
  • Escherichia coli / enzymology
  • Escherichia coli / genetics
  • Gene Expression
  • Genetic Complementation Test
  • Genetic Vectors / chemistry
  • Genetic Vectors / metabolism
  • Glutamic Acid / metabolism*
  • Humans
  • Kinetics
  • Leishmania donovani / chemistry*
  • Leishmania donovani / enzymology
  • Phosphotransferases (Carboxyl Group Acceptor) / antagonists & inhibitors
  • Phosphotransferases (Carboxyl Group Acceptor) / genetics
  • Phosphotransferases (Carboxyl Group Acceptor) / metabolism*
  • Phylogeny
  • Proline / analogs & derivatives
  • Proline / metabolism*
  • Protein Binding
  • Protein Interaction Domains and Motifs
  • Protein Multimerization
  • Protozoan Proteins / antagonists & inhibitors
  • Protozoan Proteins / genetics
  • Protozoan Proteins / metabolism*
  • Recombinant Proteins / genetics
  • Recombinant Proteins / metabolism
  • Sequence Alignment
  • Sequence Homology, Amino Acid
  • Substrate Specificity
  • Thermodynamics

Substances

  • Protozoan Proteins
  • Recombinant Proteins
  • Aspartic Acid
  • Glutamic Acid
  • Proline
  • Phosphotransferases (Carboxyl Group Acceptor)
  • glutamate 5-kinase