Bioinformat-Eggs: An Educational Primer for Use with "LIN-41 and OMA Ribonucleoprotein Complexes Mediate a Translational Repression-to-Activation Switch Controlling Oocyte Meiotic Maturation and the Oocyte-to-Embryo Transition in Caenorhabditis elegans"

Genetics. 2018 Jul;209(3):675-683. doi: 10.1534/genetics.118.301139.

Abstract

High-throughput sequencing and bioinformatic techniques have enhanced classical genetic analysis and are essential methods for geneticists. Tsukamoto and colleagues use numerous genomic and bioinformatics methods to explore the role of ribonucleoprotein complexes in regulating oocyte meiotic maturation, which is the transition between diakinesis and metaphase of meiosis I. This primer provides guidance for both educators and students as they read "LIN-41 and OMA Ribonucleoprotein Complexes Mediate a Translational Repression-to-Activation Switch Controlling Oocyte Meiotic Maturation and the Oocyte-to-Embryo Transition in Caenorhabditis elegans" The primer provides background information on the utility of the C. elegans germ line as a model for meiotic regulation, and further describes methods of bioinformatic analysis used to study translational and post-translational gene regulation. Additionally, the primer provides discussion questions and an active learning exercise designed to enhance student learning of critical genetic concepts.

Keywords: C. elegans germ line; education; high-throughput bioinformatic analysis; oocyte meiotic maturation; ribonucleoprotein complex.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Caenorhabditis elegans / genetics
  • Caenorhabditis elegans / growth & development*
  • Caenorhabditis elegans / metabolism
  • Caenorhabditis elegans Proteins / genetics
  • Caenorhabditis elegans Proteins / metabolism*
  • Carrier Proteins / genetics
  • Carrier Proteins / metabolism
  • Computational Biology / methods*
  • Female
  • Gene Expression Regulation, Developmental
  • Gene Regulatory Networks
  • Meiosis
  • Oocytes / cytology*
  • Oocytes / metabolism
  • Oogenesis
  • Protein Biosynthesis
  • RNA Recognition Motif Proteins / genetics
  • RNA Recognition Motif Proteins / metabolism*
  • Transcription Factors / genetics
  • Transcription Factors / metabolism*

Substances

  • Caenorhabditis elegans Proteins
  • Carrier Proteins
  • LIN-41 protein, C elegans
  • OMA-1 protein, C elegans
  • RNA Recognition Motif Proteins
  • Transcription Factors
  • oma-2 protein, C elegans