Membrane-active antimicrobial peptide identified in Rana arvalis by targeted DNA sequencing

Biochim Biophys Acta Biomembr. 2019 Mar 1;1861(3):651-659. doi: 10.1016/j.bbamem.2018.12.014. Epub 2018 Dec 20.

Abstract

Antimicrobial peptides (AMPs) are naturally produced, gene encoded molecules with a direct antimicrobial activity against pathogens, often also showing other immune-related properties. Anuran skin secretions are rich in bioactive peptides, including AMPs, and we have reported a novel targeted sequencing approach to identify novel AMPs simultaneously in different frog species, from small quantities of skin tissue. Over a hundred full-length peptides were identified from specimens belonging to five different Ranidae frog species, out of which 29 were novel sequences. Six of these were selected for synthesis and testing against a panel of Gram-negative and Gram-positive bacteria. One peptide, identified in Rana arvalis, proved to be a potent and broad-spectrum antimicrobial, active against ATCC bacterial strains and a multi-drug resistant clinical isolate. CD spectroscopy suggests it has a helical conformation, while surface plasmon resonance (SPR) that it may self-aggregate/oligomerize at the membrane surface. It was found to disrupt the bacterial membrane at sub-MIC, MIC and above-MIC concentrations, as observed by flow cytometry and/or visualized by atomic force microscopy (AFM). Only a limited toxicity was observed towards peripheral blood mononuclear cells (PBMC) with a more pronounced effect observed against the MEC-1 cell line.

Keywords: Aggregation; Antibacterial activity; Anuran antimicrobial peptides; Membrane active peptides; Targeted DNA sequencing.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Amphibian Proteins / genetics
  • Amphibian Proteins / isolation & purification
  • Animals
  • Anti-Bacterial Agents / isolation & purification*
  • Anti-Bacterial Agents / metabolism
  • Anti-Bacterial Agents / pharmacology
  • Antimicrobial Cationic Peptides / genetics*
  • Antimicrobial Cationic Peptides / isolation & purification
  • Antimicrobial Cationic Peptides / pharmacology
  • Cloning, Molecular / methods
  • Computational Biology
  • Gram-Negative Bacteria / drug effects
  • Membranes / drug effects*
  • Membranes / metabolism
  • Microbial Sensitivity Tests
  • Ranidae / genetics*
  • Ranidae / metabolism
  • Sequence Analysis, DNA / methods*
  • Skin / chemistry
  • Skin / metabolism

Substances

  • Amphibian Proteins
  • Anti-Bacterial Agents
  • Antimicrobial Cationic Peptides