A Robust Method for the Purification and Characterization of Recombinant Human Histone H1 Variants

Biochemistry. 2019 Jan 22;58(3):171-176. doi: 10.1021/acs.biochem.8b01060. Epub 2019 Jan 8.

Abstract

Higher order compaction of the eukaryotic genome is key to the regulation of all DNA-templated processes, including transcription. This tightly controlled process involves the formation of mononucleosomes, the fundamental unit of chromatin, packaged into higher order architectures in an H1 linker histone-dependent process. While much work has been done to delineate the precise mechanism of this event in vitro and in vivo, major gaps still exist, primarily due to a lack of molecular tools. Specifically, there has never been a successful purification and biochemical characterization of all human H1 variants. Here we present a robust method to purify H1 and illustrate its utility in the purification of all somatic variants and one germline variant. In addition, we performed a first ever side-by-side biochemical comparison, which revealed a gradient of nucleosome binding affinities and compaction capabilities. These data provide new insight into H1 redundancy and lay the groundwork for the mechanistic investigation of disease-driving mutations.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Circular Dichroism
  • Electrophoresis, Polyacrylamide Gel
  • Escherichia coli / genetics
  • Histones / chemistry
  • Histones / genetics
  • Histones / isolation & purification*
  • Histones / metabolism
  • Humans
  • Micrococcal Nuclease / metabolism
  • Nucleosomes / metabolism
  • Peptide Library
  • Protein Engineering / methods*
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics
  • Recombinant Proteins / isolation & purification*
  • Recombinant Proteins / metabolism
  • SUMO-1 Protein / genetics

Substances

  • Histones
  • Nucleosomes
  • Peptide Library
  • Recombinant Proteins
  • SUMO-1 Protein
  • Micrococcal Nuclease