Improved n-Butanol Production from Clostridium cellulovorans by Integrated Metabolic and Evolutionary Engineering

Appl Environ Microbiol. 2019 Mar 22;85(7):e02560-18. doi: 10.1128/AEM.02560-18. Print 2019 Apr 1.

Abstract

Clostridium cellulovorans DSM 743B offers potential as a chassis strain for biomass refining by consolidated bioprocessing (CBP). However, its n-butanol production from lignocellulosic biomass has yet to be demonstrated. This study demonstrates the construction of a coenzyme A (CoA)-dependent acetone-butanol-ethanol (ABE) pathway in C. cellulovorans by introducing adhE1 and ctfA-ctfB-adc genes from Clostridium acetobutylicum ATCC 824, which enabled it to produce n-butanol using the abundant and low-cost agricultural waste of alkali-extracted, deshelled corn cobs (AECC) as the sole carbon source. Then, a novel adaptive laboratory evolution (ALE) approach was adapted to strengthen the n-butanol tolerance of C. cellulovorans to fully utilize its n-butanol output potential. To further improve n-butanol production, both metabolic engineering and evolutionary engineering were combined, using the evolved strain as a host for metabolic engineering. The n-butanol production from AECC of the engineered C. cellulovorans was increased 138-fold, from less than 0.025 g/liter to 3.47 g/liter. This method represents a milestone toward n-butanol production by CBP, using a single recombinant clostridium strain. The engineered strain offers a promising CBP-enabling microbial chassis for n-butanol fermentation from lignocellulose.IMPORTANCE Due to a lack of genetic tools, Clostridium cellulovorans DSM 743B has not been comprehensively explored as a putative strain platform for n-butanol production by consolidated bioprocessing (CBP). Based on the previous study of genetic tools, strain engineering of C. cellulovorans for the development of a CBP-enabling microbial chassis was demonstrated in this study. Metabolic engineering and evolutionary engineering were integrated to improve the n-butanol production of C. cellulovorans from the low-cost renewable agricultural waste of alkali-extracted, deshelled corn cobs (AECC). The n-butanol production from AECC was increased 138-fold, from less than 0.025 g/liter to 3.47 g/liter, which represents the highest titer of n-butanol produced using a single recombinant clostridium strain by CBP reported to date. This engineered strain serves as a promising chassis for n-butanol production from lignocellulose by CBP.

Keywords: Clostridium; adaptive laboratory evolution; consolidated bioprocessing; metabolic engineering; n-butanol.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 1-Butanol / metabolism*
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Batch Cell Culture Techniques
  • Biomass
  • Clostridium acetobutylicum / genetics
  • Clostridium acetobutylicum / metabolism
  • Clostridium cellulovorans / genetics*
  • Clostridium cellulovorans / growth & development
  • Clostridium cellulovorans / metabolism*
  • Coenzyme A / genetics
  • DNA, Bacterial / genetics
  • DNA, Bacterial / isolation & purification
  • Evolution, Molecular*
  • Fermentation
  • Gene Expression Regulation, Bacterial
  • Lignin / metabolism
  • Metabolic Engineering*
  • Microorganisms, Genetically-Modified / genetics
  • Oxidoreductases / genetics

Substances

  • Bacterial Proteins
  • DNA, Bacterial
  • lignocellulose
  • 1-Butanol
  • Lignin
  • Oxidoreductases
  • Coenzyme A