Programming chain-growth copolymerization of DNA hairpin tiles for in-vitro hierarchical supramolecular organization

Nat Commun. 2019 Mar 1;10(1):1006. doi: 10.1038/s41467-019-09004-4.

Abstract

Formation of biological filaments via intracellular supramolecular polymerization of proteins or protein/nucleic acid complexes is under programmable and spatiotemporal control to maintain cellular and genomic integrity. Here we devise a bioinspired, catassembly-like isothermal chain-growth approach to copolymerize DNA hairpin tiles (DHTs) into nanofilaments with desirable composition, chain length and function. By designing metastable DNA hairpins with shape-defining intramolecular hydrogen bonds, we generate two types of DHT monomers for copolymerization with high cooperativity and low dispersity indexes. Quantitative single-molecule dissection methods reveal that catalytic opening of a DHT motif harbouring a toehold triggers successive branch migration, which autonomously propagates to form copolymers with alternate tile units. We find that these shape-defined supramolecular nanostructures become substrates for efficient endocytosis by living mammalian cells in a stiffness-dependent manner. Hence, this catassembly-like in-vitro reconstruction approach provides clues for understanding structure-function relationship of biological filaments under physiological and pathological conditions.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • A549 Cells
  • Base Sequence
  • Catalytic Domain
  • DNA / chemistry*
  • DNA, Single-Stranded / chemistry
  • Endocytosis
  • Humans
  • Hydrogen Bonding
  • Models, Genetic
  • Nanostructures
  • Nucleic Acid Conformation
  • Nucleic Acid Hybridization
  • Polymerization*

Substances

  • DNA, Single-Stranded
  • DNA