Function and solution structure of the Arabidopsis thaliana RALF8 peptide

Protein Sci. 2019 Jun;28(6):1115-1126. doi: 10.1002/pro.3628.

Abstract

We report the recombinant preparation from Escherichia coli cells of samples of two closely related, small, secreted cysteine-rich plant peptides: rapid alkalinization factor 1 (RALF1) and rapid alkalinization factor 8 (RALF8). Purified samples of the native sequence of RALF8 exhibited well-resolved nuclear magnetic resonance (NMR) spectra and also biological activity through interaction with a plant receptor kinase, cytoplasmic calcium mobilization, and in vivo root growth suppression. By contrast, RALF1 could only be isolated from inclusion bodies as a construct containing an N-terminal His-tag; its poorly resolved NMR spectrum was indicative of aggregation. We prepared samples of the RALF8 peptide labeled with 15 N and 13 C for NMR analysis and obtained near complete 1 H, 13 C, and 15 N NMR assignments; determined the disulfide pairing of its four cysteine residues; and examined its solution structure. RALF8 is mostly disordered except for the two loops spanned by each of its two disulfide bridges.

Keywords: NMR solution structure; cytoplasmic calcium activation assay; disulfide pairing; peptide dynamics; peptide production; peptide structure; rapid alkanization factor (RALF); root growth assay; stable isotope labeling.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Arabidopsis / chemistry*
  • Arabidopsis Proteins / chemistry*
  • Arabidopsis Proteins / metabolism*
  • Nuclear Magnetic Resonance, Biomolecular
  • Protein Conformation
  • Sequence Alignment
  • Solutions

Substances

  • Arabidopsis Proteins
  • RAPID ALKALINIZATION FACTOR-LIKE8 protein, Arabidopsis
  • Solutions